Non-Coding RNA Search

Ss1.1-rpgl21_d18.5

Sequence:


               
               CTCAAGTCTAAATGCTGCCCCGCAGGCCAGCAGGAGTCTCTTCCCATCCCCTTTTGACTC
ACGCCTCACTCGCAGTGGAGACCCATTGTCCCCCATTGCTGCCAGGTGATTGAAAGAAGC
CTCACCAGGACTGATCTTCCCACCCCCAGAGCTGCCCTACCCACCCCCCTGGGCAAAGCA
GGGCATCTGGGAAGGAAGACATGCAAAAGTTCTCAGACAGCCAGGCCTGAACAGAAAGGC
CTGGAGACATTCAGAGGGAGGTCAGAAGGCCCCGTGTGGTCCCACCTCCCGTCCCCTTGC
CCATTTTCCCATCACCACCTCAGTGGTCTCCATGGTAACCCTGCAGGACCAACCTCCTCT
GGGGAGGTGGGCCTGGACCACCACTCTCCCACCAGCCAGCCCACGCAACCGCCAAGACCC
CCTCCTTCAGCTCAGCCCCCTGCGAGGGCTCCAGCTCAGATGGGAATCTCAGAGAGGAGT
GGGCCAAGGAGAAGCAACCCTCTGGTCTCAGAGAGGGACGTATTTCCTTTCTTTCCTGGA
GAAAGGAAGCTAAGTTTTGAGAAGTGGTGGGACAAGGGAACGGAGGTTACCAGCCAGCAG
CGTGGGCGTTGTACTGTCTTTATTTTTAAAACCACTAAAGTGCAGACTGATTTTGCACTT
TTCTCCACTTTTTTTTTTTTCCTCTTAAGTTTTTGATGTCTTTTTTTAAACATACTTTCT
TGGTTTTCTAATGGAGTATATAGTTTAGCCATTTCCACAGACTCTGACCTCCTCTCTTTA
ACACTTTTTTTTTTTTTTTTGGATGGGGGAAAGGAGAGGTGCGGGGTTGGGGGGTGGGGG
ATCCAGCCTCTCCGCACCCATTCACCCCACCTCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAAGTCTAAATGCTGCCCCGCAGGCCAGCAGGAGTCTCTTCCCATCCCCTTTTGACTC
ACGCCTCACTCGCAGTGGAGACCCATTGTCCCCCATTGCTGCCAGGTGATTGAAAGAAGC
CTCACCAGGACTGATCTTCCCACCCCCAGAGCTGCCCTACCCACCCCCCTGGGCAAAGCA
GGGCATCTGGGAAGGAAGACATGCAAAAGTTCTCAGACAGCCAGGCCTGAACAGAAAGGC
CTGGAGACATTCAGAGGGAGGTCAGAAGGCCCCGTGTGGTCCCACCTCCCGTCCCCTTGC
CCATTTTCCCATCACCACCTCAGTGGTCTCCATGGTAACCCTGCAGGACCAACCTCCTCT
GGGGAGGTGGGCCTGGACCACCACTCTCCCACCAGCCAGCCCACGCAACCGCCAAGACCC
CCTCCTTCAGCTCAGCCCCCTGCGAGGGCTCCAGCTCAGATGGGAATCTCAGAGAGGAGT
GGGCCAAGGAGAAGCAACCCTCTGGTCTCAGAGAGGGACGTATTTCCTTTCTTTCCTGGA
GAAAGGAAGCTAAGTTTTGAGAAGTGGTGGGACAAGGGAACGGAGGTTACCAGCCAGCAG
CGTGGGCGTTGTACTGTCTTTATTTTTAAAACCACTAAAGTGCAGACTGATTTTGCACTT
TTCTCCACTTTTTTTTTTTTCCTCTTAAGTTTTTGATGTCTTTTTTTAAACATACTTTCT
TGGTTTTCTAATGGAGTATATAGTTTAGCCATTTCCACAGACTCTGACCTCCTCTCTTTA
ACACTTTTTTTTTTTTTTTTGGATGGGGGAAAGGAGAGGTGCGGGGTTGGGGGGTGGGGG
ATCCAGCCTCTCCGCACCCATTCACCCCACCTCTCT

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               22-118, - strand, RNAz p=0.898714
               

               
               140-249, - strand, RNAz p=0.888849
               

               
               298-414, - strand, RNAz p=0.992056
               

               
               303-414, - strand, RNAz p=0.506126

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               22-118, - strand, RNAz p=0.898714
               

               
               140-249, - strand, RNAz p=0.888849
               

               
               298-414, - strand, RNAz p=0.992056
               

               
               303-414, - strand, RNAz p=0.506126

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_000599, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000599, -

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-414, gnl|bosTau2|chr2 (57620519-57620927)
               

               
               1-414, gnl|canFam2|chr37 (26575822-26576325)
               

               
               1-414, gnl|echTel1|scaffold_207342 (694-1276)
               

               
               1-414, gnl|hg17|chr2 (217363319-217363906)
               

               
               1-414, gnl|Hg17|chr2 (217363843-217363398)
               

               
               1-414, gnl|mm7|chr1 (73100754-73101285)
               

               
               1-414, gnl|Mm7|chr1 (73101233-73100834)
               

               
               1-414, gnl|monDom2|scaffold_39 (4372063-4371495)
               

               
               1-414, gnl|panTro1|chr13 (107518065-107518653)
               

               
               1-414, gnl|rheMac2|chr12 (80479703-80480304)
               

               
               1-414, gnl|rn3|chr9 (72147438-72147949)
               


               
               418-568, gnl|bosTau2|chr2 (57620977-57621120)
               

               
               418-568, gnl|Hg17|chr2 (217363348-217363185)
               

               
               418-568, gnl|Mm7|chr1 (73100783-73100616)
               


               
               603-777, gnl|bosTau2|chr2 (57621125-57621296)
               

               
               603-777, gnl|Hg17|chr2 (217363167-217362997)
               

               
               603-777, gnl|Mm7|chr1 (73100611-73100444)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-414, gnl|bosTau2|chr2 (57620519-57620927)
               

               
               1-414, gnl|canFam2|chr37 (26575822-26576325)
               

               
               1-414, gnl|echTel1|scaffold_207342 (694-1276)
               

               
               1-414, gnl|hg17|chr2 (217363319-217363906)
               

               
               1-414, gnl|Hg17|chr2 (217363843-217363398)
               

               
               1-414, gnl|mm7|chr1 (73100754-73101285)
               

               
               1-414, gnl|Mm7|chr1 (73101233-73100834)
               

               
               1-414, gnl|monDom2|scaffold_39 (4372063-4371495)
               

               
               1-414, gnl|panTro1|chr13 (107518065-107518653)
               

               
               1-414, gnl|rheMac2|chr12 (80479703-80480304)
               

               
               1-414, gnl|rn3|chr9 (72147438-72147949)
               


               
               418-568, gnl|bosTau2|chr2 (57620977-57621120)
               

               
               418-568, gnl|Hg17|chr2 (217363348-217363185)
               

               
               418-568, gnl|Mm7|chr1 (73100783-73100616)
               


               
               603-777, gnl|bosTau2|chr2 (57621125-57621296)
               

               
               603-777, gnl|Hg17|chr2 (217363167-217362997)
               

               
               603-777, gnl|Mm7|chr1 (73100611-73100444)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cov (0.396458)
               

               
               pgl (0.35545)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               pgl (0.35545)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	22-118, - strand, RNAz p=0.898714
	140-249, - strand, RNAz p=0.888849
	298-414, - strand, RNAz p=0.992056
	303-414, - strand, RNAz p=0.506126

	1-414, gnl\|bosTau2\|chr2 (57620519-57620927)
	1-414, gnl\|canFam2\|chr37 (26575822-26576325)
	1-414, gnl\|echTel1\|scaffold_207342 (694-1276)
	1-414, gnl\|hg17\|chr2 (217363319-217363906)
	1-414, gnl\|Hg17\|chr2 (217363843-217363398)
	1-414, gnl\|mm7\|chr1 (73100754-73101285)
	1-414, gnl\|Mm7\|chr1 (73101233-73100834)
	1-414, gnl\|monDom2\|scaffold_39 (4372063-4371495)
	1-414, gnl\|panTro1\|chr13 (107518065-107518653)
	1-414, gnl\|rheMac2\|chr12 (80479703-80480304)
	1-414, gnl\|rn3\|chr9 (72147438-72147949)

	418-568, gnl\|bosTau2\|chr2 (57620977-57621120)
	418-568, gnl\|Hg17\|chr2 (217363348-217363185)
	418-568, gnl\|Mm7\|chr1 (73100783-73100616)

	603-777, gnl\|bosTau2\|chr2 (57621125-57621296)
	603-777, gnl\|Hg17\|chr2 (217363167-217362997)
	603-777, gnl\|Mm7\|chr1 (73100611-73100444)

	cov (0.396458)
	pgl (0.35545)
	mas (0.210305)
	nep (0.183925)
	eye (0.170503)
	csp (0.161186)
	pty (0.142714)
	cly (0.120642)
	eru (0.120048)
	med (0.116252)
	eje (0.0988338)