Ss1.1-rpgl21_f15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACAGATGTCCAAAGCCTTTGTTGTACCATTCTGGGGAGTGACCTCTCAGGTCCACCCTG CAGACGTGGGTCAGCCGTGACTTGCCCGAGCCGCAGGGCTCTATGAGGTACTGCGAGTCC ATCACCACGGCCCGCACGCCGCCCAGGAGCGGGGCCTCCTCGTGCTCCACGGAGAGGGAC ACCAGCGTGCACATCCCTTTGGGCAGGTCTGTCCTCCAGGTCCTGAGAACCACGAAGTCT CTGGAAGGATGGGGCGCCATGCTGTTCAGCACGTACTGGTAGACTTCGGTTTGCTTGTCC AGAGTCTCCACCACCTTCCACTGCACAAAATCCTCATCCCACAGGTGGCGCTCCCTGAGC ACGCGACTCAGAACCACCGAGGGGGGCGCTTCCACCTCCACGGACGCCTTCCACAGCCGC AGCGGGTGCCTGTCTCCCACCTTTTTGAAGGCAAGGTCTGTGTTGTCTGCGCTGGAACAT GTGACCCATCCTTTGAACTTCTCCTTGGCCTCCCTCTGGAGGCCCTGGACGAGATGCTCC AGGTACGTGCGGAAAGTGGCCCCACTCTCCTCCAGCTGGGTCCCCAGATCTTCCAGAGTC GGAGGGTGGATCTCAGCCTCTGCATATGAGTTGTGAGACTGGGCCACCATCTCCAGCGGG ACCTCGAAAAGCCTGTTGCATTCCACGATCATGTGGGCCAGCCCCTGAGCTGCGGCCAGA TTCTCACTGAGGTCCTTCTGGTCCGGCTTCCCGGTGGCATACTTCTTCTGGATGACTCTG GGGGAGCTTTCTTTCTTCAGTAAGTTCAGATGGAAGAGGGAGGGGGCCAGACACACCGCC AGGTTCATGGGCGTCATCTGGTTCTCCTCCACCAGGTCCACCACGTCCTTGAGGAAGCAC AGCAGCGTCTGCAGCACCTCCCTGTTCTCGTCGGCCAGCAGCAGGACGGCGGCCTGCGCT GCCTGCAGCTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACAGATGTCCAAAGCCTTTGTTGTACCATTCTGGGGAGTGACCTCTCAGGTCCACCCTG CAGACGTGGGTCAGCCGTGACTTGCCCGAGCCGCAGGGCTCTATGAGGTACTGCGAGTCC ATCACCACGGCCCGCACGCCGCCCAGGAGCGGGGCCTCCTCGTGCTCCACGGAGAGGGAC ACCAGCGTGCACATCCCTTTGGGCAGGTCTGTCCTCCAGGTCCTGAGAACCACGAAGTCT CTGGAAGGATGGGGCGCCATGCTGTTCAGCACGTACTGGTAGACTTCGGTTTGCTTGTCC AGAGTCTCCACCACCTTCCACTGCACAAAATCCTCATCCCACAGGTGGCGCTCCCTGAGC ACGCGACTCAGAACCACCGAGGGGGGCGCTTCCACCTCCACGGACGCCTTCCACAGCCGC AGCGGGTGCCTGTCTCCCACCTTTTTGAAGGCAAGGTCTGTGTTGTCTGCGCTGGAACAT GTGACCCATCCTTTGAACTTCTCCTTGGCCTCCCTCTGGAGGCCCTGGACGAGATGCTCC AGGTACGTGCGGAAAGTGGCCCCACTCTCCTCCAGCTGGGTCCCCAGATCTTCCAGAGTC GGAGGGTGGATCTCAGCCTCTGCATATGAGTTGTGAGACTGGGCCACCATCTCCAGCGGG ACCTCGAAAAGCCTGTTGCATTCCACGATCATGTGGGCCAGCCCCTGAGCTGCGGCCAGA TTCTCACTGAGGTCCTTCTGGTCCGGCTTCCCGGTGGCATACTTCTTCTGGATGACTCTG GGGGAGCTTTCTTTCTTCAGTAAGTTCAGATGGAAGAGGGAGGGGGCCAGACACACCGCC AGGTTCATGGGCGTCATCTGGTTCTCCTCCACCAGGTCCACCACGTCCTTGAGGAAGCAC AGCAGCGTCTGCAGCACCTCCCTGTTCTCGTCGGCCAGCAGCAGGACGGCGGCCTGCGCT GCCTGCAGCTGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 439-557, - strand, RNAz p=0.539902 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 439-557, - strand, RNAz p=0.539902 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 46-225, gnl|bosTau2|chr11 (43881859-43881680) | |
| 46-225, gnl|canFam2|chr25 (10099164-10098941) | |
| 46-225, gnl|danRer3|chr19 (30740825-30741026) | |
| 46-225, gnl|dasNov1|scaffold_27770 (6112-6310) | |
| 46-225, gnl|echTel1|scaffold_109688 (188-403) | |
| 46-225, gnl|fr1|chrUn (56955212-56954998) | |
| 46-225, gnl|galGal2|chr1 (166275893-166275667) | |
| 46-225, gnl|hg17|chr13 (32578884-32579107) | |
| 46-225, gnl|Hg17|chr13 (32578895-32579074) | |
| 46-225, gnl|loxAfr1|scaffold_70304 (7880-7665) | |
| 46-225, gnl|mm7|chr5 (149974601-149974822) | |
| 46-225, gnl|Mm7|chr5 (149974609-149974788) | |
| 46-225, gnl|monDom2|scaffold_15 (43685809-43686033) | |
| 46-225, gnl|oryCun1|scaffold_189366 (1261-1038) | |
| 46-225, gnl|panTro1|chr14 (31778022-31778245) | |
| 46-225, gnl|rheMac2|chr17 (12481837-12482060) | |
| 46-225, gnl|rn3|chr12 (3691758-3691538) | |
| 46-225, gnl|tetNig1|chr16 (4759299-4759101) | |
| 46-225, gnl|xenTro1|scaffold_384 (899306-899105) | |
| 439-664, gnl|bosTau2|chr11 (43877021-43876796) | |
| 439-664, gnl|Hg17|chr13 (32582821-32583046) | |
| 439-664, gnl|Mm7|chr5 (149978285-149978510) | |
| 778-972, gnl|bosTau2|chr11 (43875287-43875093) | |
| 778-972, gnl|Hg17|chr13 (32584858-32585052) | |
| 778-972, gnl|Mm7|chr5 (149980082-149980276) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-225, gnl|bosTau2|chr11 (43881859-43881680) | |
| 46-225, gnl|canFam2|chr25 (10099164-10098941) | |
| 46-225, gnl|danRer3|chr19 (30740825-30741026) | |
| 46-225, gnl|dasNov1|scaffold_27770 (6112-6310) | |
| 46-225, gnl|echTel1|scaffold_109688 (188-403) | |
| 46-225, gnl|fr1|chrUn (56955212-56954998) | |
| 46-225, gnl|galGal2|chr1 (166275893-166275667) | |
| 46-225, gnl|hg17|chr13 (32578884-32579107) | |
| 46-225, gnl|Hg17|chr13 (32578895-32579074) | |
| 46-225, gnl|loxAfr1|scaffold_70304 (7880-7665) | |
| 46-225, gnl|mm7|chr5 (149974601-149974822) | |
| 46-225, gnl|Mm7|chr5 (149974609-149974788) | |
| 46-225, gnl|monDom2|scaffold_15 (43685809-43686033) | |
| 46-225, gnl|oryCun1|scaffold_189366 (1261-1038) | |
| 46-225, gnl|panTro1|chr14 (31778022-31778245) | |
| 46-225, gnl|rheMac2|chr17 (12481837-12482060) | |
| 46-225, gnl|rn3|chr12 (3691758-3691538) | |
| 46-225, gnl|tetNig1|chr16 (4759299-4759101) | |
| 46-225, gnl|xenTro1|scaffold_384 (899306-899105) | |
| 439-664, gnl|bosTau2|chr11 (43877021-43876796) | |
| 439-664, gnl|Hg17|chr13 (32582821-32583046) | |
| 439-664, gnl|Mm7|chr5 (149978285-149978510) | |
| 778-972, gnl|bosTau2|chr11 (43875287-43875093) | |
| 778-972, gnl|Hg17|chr13 (32584858-32585052) | |
| 778-972, gnl|Mm7|chr5 (149980082-149980276) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.132784) | |
| pgl (0.118483) |