Non-Coding RNA Search

Ss1.1-rpgl22_c11.5

Sequence:


               
               TCGGTTACCCAAAGTTTACAAATGGAGTTTTCAGATGTCGGATCTGGAAAATATGACAAG
TGCTGAACGTATCACAATTCTTCAAGAAAAACTACAAGAAATCAGAAAGCATTATCTGTC
ATTAAAATCTGAAGTAGCTTCCATTGATCGGAGGAGAAAGCGTTTAAAGAAGAAAGAGAG
AGAAAGTGCTGCTACATCCTCCTCCTCTTCTTCCCCTTCATCCAGCTCCATAACAGCTGC
TGTTATGTTAACTTTAGCTGAACCCTCAATGTCCAGCGCATCACAGAATGGAATGTCAGT
TGAGTGCAGGTGACAGCAGGACTTGCTAAAGCACTTTGCACTTAATGGCTGTTGAGGGCC
ACGTCTTTTTTTATACTGCACAGTGGCACAAAAAAATCAGACAAGCACTATTTTATATTT
AAAAATTGTTTCTTGACAAGCTGACTTGGCACTTAAGTGCACTTTTTTTATGAAGAAAAA
GTACAATGAACTGCTTTTCCTCAAGCAATAATTGTTTCCAACTTGTCTGGGAATTGTGTG
TCTGGTAACTTGAAGGCCTTCCACTGTGGCAAATGGAGGCTTTTCACTGCCTGTAGAGAC
AATACAGTAAGCATAGTCATTGGGTGGCCAGAACATGTTAAGATAACTTACTGTATATGT
ATTCCCTTGTATTTTGTTAAAGCTGGAACATTTGATATTTTTCCATTTATTTATGAAAAA
ATATGAACCTATTTTCATTTGTACAAGCTAATTGTTTTTTAAAGCAAGTCACCTTAGGGT
GGCTTTAATTGTATAAGTCAAGCACATGTAATAAATTCAAAACCTGCAGTTAACAGGATA
TTAGACATCAATCCTGATAACCAAATATTGAAGATTCTCTTTAAAAAAAGACTGCACATG
TTTACAGGTTTGAATTAGGCTAAAAGGTCTTGCAGTGGCTTTTCATGCCCCTTCAAATTG
GAATGGAACTACTGTACTTTGCCATTTTTCTATAAATCAGTATTTTTTTTTAATTTTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGTTACCCAAAGTTTACAAATGGAGTTTTCAGATGTCGGATCTGGAAAATATGACAAG
TGCTGAACGTATCACAATTCTTCAAGAAAAACTACAAGAAATCAGAAAGCATTATCTGTC
ATTAAAATCTGAAGTAGCTTCCATTGATCGGAGGAGAAAGCGTTTAAAGAAGAAAGAGAG
AGAAAGTGCTGCTACATCCTCCTCCTCTTCTTCCCCTTCATCCAGCTCCATAACAGCTGC
TGTTATGTTAACTTTAGCTGAACCCTCAATGTCCAGCGCATCACAGAATGGAATGTCAGT
TGAGTGCAGGTGACAGCAGGACTTGCTAAAGCACTTTGCACTTAATGGCTGTTGAGGGCC
ACGTCTTTTTTTATACTGCACAGTGGCACAAAAAAATCAGACAAGCACTATTTTATATTT
AAAAATTGTTTCTTGACAAGCTGACTTGGCACTTAAGTGCACTTTTTTTATGAAGAAAAA
GTACAATGAACTGCTTTTCCTCAAGCAATAATTGTTTCCAACTTGTCTGGGAATTGTGTG
TCTGGTAACTTGAAGGCCTTCCACTGTGGCAAATGGAGGCTTTTCACTGCCTGTAGAGAC
AATACAGTAAGCATAGTCATTGGGTGGCCAGAACATGTTAAGATAACTTACTGTATATGT
ATTCCCTTGTATTTTGTTAAAGCTGGAACATTTGATATTTTTCCATTTATTTATGAAAAA
ATATGAACCTATTTTCATTTGTACAAGCTAATTGTTTTTTAAAGCAAGTCACCTTAGGGT
GGCTTTAATTGTATAAGTCAAGCACATGTAATAAATTCAAAACCTGCAGTTAACAGGATA
TTAGACATCAATCCTGATAACCAAATATTGAAGATTCTCTTTAAAAAAAGACTGCACATG
TTTACAGGTTTGAATTAGGCTAAAAGGTCTTGCAGTGGCTTTTCATGCCCCTTCAAATTG
GAATGGAACTACTGTACTTTGCCATTTTTCTATAAATCAGTATTTTTTTTTAATTTTGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11277001|pir||T43497

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11277001|pir||T43497

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               47-187, gnl|bosTau2|chr10 (48009486-48009346)
               

               
               47-187, gnl|canFam2|chr8 (36754593-36754739)
               

               
               47-187, gnl|danRer3|chr17 (8554744-8554890)
               

               
               47-187, gnl|dasNov1|scaffold_170129 (1201-1347)
               

               
               47-187, gnl|echTel1|scaffold_288426 (39434-39288)
               

               
               47-187, gnl|fr1|chrUn (286474614-286474760)
               

               
               47-187, gnl|galGal2|chr5 (51967326-51967180)
               

               
               47-187, gnl|hg17|chr14 (57903359-57903505)
               

               
               47-187, gnl|Hg17|chr14 (57903362-57903502)
               

               
               47-187, gnl|loxAfr1|scaffold_147 (100491-100344)
               

               
               47-187, gnl|mm7|chr12 (69031305-69031451)
               

               
               47-187, gnl|Mm7|chr12 (69031308-69031448)
               

               
               47-187, gnl|monDom2|scaffold_8 (70413221-70413367)
               

               
               47-187, gnl|oryCun1|scaffold_213913 (49903-50049)
               

               
               47-187, gnl|panTro1|chr15 (57461745-57461891)
               

               
               47-187, gnl|rheMac2|chr7 (121383538-121383684)
               

               
               47-187, gnl|rn3|chr6 (93202607-93202753)
               

               
               47-187, gnl|tetNig1|chrUn_random (83027625-83027771)
               

               
               47-187, gnl|xenTro1|scaffold_33 (1244718-1244572)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-187, gnl|bosTau2|chr10 (48009486-48009346)
               

               
               47-187, gnl|canFam2|chr8 (36754593-36754739)
               

               
               47-187, gnl|danRer3|chr17 (8554744-8554890)
               

               
               47-187, gnl|dasNov1|scaffold_170129 (1201-1347)
               

               
               47-187, gnl|echTel1|scaffold_288426 (39434-39288)
               

               
               47-187, gnl|fr1|chrUn (286474614-286474760)
               

               
               47-187, gnl|galGal2|chr5 (51967326-51967180)
               

               
               47-187, gnl|hg17|chr14 (57903359-57903505)
               

               
               47-187, gnl|Hg17|chr14 (57903362-57903502)
               

               
               47-187, gnl|loxAfr1|scaffold_147 (100491-100344)
               

               
               47-187, gnl|mm7|chr12 (69031305-69031451)
               

               
               47-187, gnl|Mm7|chr12 (69031308-69031448)
               

               
               47-187, gnl|monDom2|scaffold_8 (70413221-70413367)
               

               
               47-187, gnl|oryCun1|scaffold_213913 (49903-50049)
               

               
               47-187, gnl|panTro1|chr15 (57461745-57461891)
               

               
               47-187, gnl|rheMac2|chr7 (121383538-121383684)
               

               
               47-187, gnl|rn3|chr6 (93202607-93202753)
               

               
               47-187, gnl|tetNig1|chrUn_random (83027625-83027771)
               

               
               47-187, gnl|xenTro1|scaffold_33 (1244718-1244572)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pgl (0.236967)
               

               
               cbl (0.229595)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               cbl (0.229595)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)

	47-187, gnl\|bosTau2\|chr10 (48009486-48009346)
	47-187, gnl\|canFam2\|chr8 (36754593-36754739)
	47-187, gnl\|danRer3\|chr17 (8554744-8554890)
	47-187, gnl\|dasNov1\|scaffold_170129 (1201-1347)
	47-187, gnl\|echTel1\|scaffold_288426 (39434-39288)
	47-187, gnl\|fr1\|chrUn (286474614-286474760)
	47-187, gnl\|galGal2\|chr5 (51967326-51967180)
	47-187, gnl\|hg17\|chr14 (57903359-57903505)
	47-187, gnl\|Hg17\|chr14 (57903362-57903502)
	47-187, gnl\|loxAfr1\|scaffold_147 (100491-100344)
	47-187, gnl\|mm7\|chr12 (69031305-69031451)
	47-187, gnl\|Mm7\|chr12 (69031308-69031448)
	47-187, gnl\|monDom2\|scaffold_8 (70413221-70413367)
	47-187, gnl\|oryCun1\|scaffold_213913 (49903-50049)
	47-187, gnl\|panTro1\|chr15 (57461745-57461891)
	47-187, gnl\|rheMac2\|chr7 (121383538-121383684)
	47-187, gnl\|rn3\|chr6 (93202607-93202753)
	47-187, gnl\|tetNig1\|chrUn_random (83027625-83027771)
	47-187, gnl\|xenTro1\|scaffold_33 (1244718-1244572)