Non-Coding RNA Search

Ss1.1-rpgl22_d19.5

Sequence:


               
               CTGCCCGGCCAGTGGATCGTTGACTTCCTTAAAGTCAGAGGGGCTTGTCAAGTTCCAGAA
TGTCTCCTTTGCCTACCCGAACCGACCAGAGGTCCCAGTGCTGCAGGGCCTCACGTTCAC
TCTACGTCCTGGTGAGGTGACCGCCCTCGTGGGGCCCAATGGGTCTGGGAAGAGCACCGT
GGCTGCCCTGCTGCAGAACCTGTACCAGCCCACGGAGGGGCAGGTGCTGCTGGGTGAGAA
GCCCCTTCCTGAATATGAGCACCGCTACCTGCACAGACAGGTGGCTGCGGTGGGGCAAGA
GCCACAGCTCTTTGGAAGAAGTTTTCAAGAAAACATTGCCTATGGCCTGAGCCAGAAGCC
AGCAATGGAGGAAGTCATAGCTGCCGCCGTGGAGTCCGGAGCCCATAGCTTCATCTCCAA
GCTCCCGCAAGGCTACGACACAGAGGTAGGTGAGGCTGGGAGCCAGCTATCAGGGGGTCA
GCGACAGGCAGTGGCCTTGGCTCGAGCCTTGATCCGGAAACCACGGGTACTCATCCTGGA
TGATGCTACCAGTGCCCTGGATGCAAACAGTCAAGCACGGGTGGAGTCGCTCCTGTATGA
AAGCCCTGAGCGGTACTCCCGGTCTGTGCTTCTCATCACCCAGCGTCTTAGTTCCGTGGA
GCAGGCCAATCACATCCTCTTTCTGGAAGGAGGCACCATTGTTGAGGAGGGAACCCACCA
GCAGCTCATGGCTAATAAGGGGCGCTATTGGACCATGTTGCAGGCTCCTGGTGGGTCAGA
TGCTCCTGAGTGAAGCTCTTCTCAGACCTGCACACTCCATCTCCCTCCCTTTTTCTCTCC
TCTGTATAGTGGAGAATTTGAGAACAAGGGTCTTAACTAGAGGTGCAGCTGCTTCTGGGG
GGAAAGGGGGAGTCACATTCTAAAATGTAACCCCCTAGGTAATGCCTGAGATTTTGGCAT
GAGTGTCACCCACTGTCCAAGCTCCTCTTGATAATGCAGATTTCCTGGGAGAAAACCGGG
CTCCTAACTCTGTAGTGTAACTCCTTGGAGCCAGGTTGGTGTGGCTAGAACCCTGAAAAT
GAAGTGAAATATTTAAAATACGCAGAAAGGGAAGGTCAGCTCCTTTCGGGTCTCATCAGA
AGCATGTGCTGGCCCATAAATACCCTGTGGATTCTTGGTATTTATAATAAAATTGGTGTT
TCGTAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCCGGCCAGTGGATCGTTGACTTCCTTAAAGTCAGAGGGGCTTGTCAAGTTCCAGAA
TGTCTCCTTTGCCTACCCGAACCGACCAGAGGTCCCAGTGCTGCAGGGCCTCACGTTCAC
TCTACGTCCTGGTGAGGTGACCGCCCTCGTGGGGCCCAATGGGTCTGGGAAGAGCACCGT
GGCTGCCCTGCTGCAGAACCTGTACCAGCCCACGGAGGGGCAGGTGCTGCTGGGTGAGAA
GCCCCTTCCTGAATATGAGCACCGCTACCTGCACAGACAGGTGGCTGCGGTGGGGCAAGA
GCCACAGCTCTTTGGAAGAAGTTTTCAAGAAAACATTGCCTATGGCCTGAGCCAGAAGCC
AGCAATGGAGGAAGTCATAGCTGCCGCCGTGGAGTCCGGAGCCCATAGCTTCATCTCCAA
GCTCCCGCAAGGCTACGACACAGAGGTAGGTGAGGCTGGGAGCCAGCTATCAGGGGGTCA
GCGACAGGCAGTGGCCTTGGCTCGAGCCTTGATCCGGAAACCACGGGTACTCATCCTGGA
TGATGCTACCAGTGCCCTGGATGCAAACAGTCAAGCACGGGTGGAGTCGCTCCTGTATGA
AAGCCCTGAGCGGTACTCCCGGTCTGTGCTTCTCATCACCCAGCGTCTTAGTTCCGTGGA
GCAGGCCAATCACATCCTCTTTCTGGAAGGAGGCACCATTGTTGAGGAGGGAACCCACCA
GCAGCTCATGGCTAATAAGGGGCGCTATTGGACCATGTTGCAGGCTCCTGGTGGGTCAGA
TGCTCCTGAGTGAAGCTCTTCTCAGACCTGCACACTCCATCTCCCTCCCTTTTTCTCTCC
TCTGTATAGTGGAGAATTTGAGAACAAGGGTCTTAACTAGAGGTGCAGCTGCTTCTGGGG
GGAAAGGGGGAGTCACATTCTAAAATGTAACCCCCTAGGTAATGCCTGAGATTTTGGCAT
GAGTGTCACCCACTGTCCAAGCTCCTCTTGATAATGCAGATTTCCTGGGAGAAAACCGGG
CTCCTAACTCTGTAGTGTAACTCCTTGGAGCCAGGTTGGTGTGGCTAGAACCCTGAAAAT
GAAGTGAAATATTTAAAATACGCAGAAAGGGAAGGTCAGCTCCTTTCGGGTCTCATCAGA
AGCATGTGCTGGCCCATAAATACCCTGTGGATTCTTGGTATTTATAATAAAATTGGTGTT
TCGTAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|15988434|pdb|1JJ7|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15988434|pdb|1JJ7|A

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               104-283, gnl|bosTau2|chr23 (5529663-5529484)
               

               
               104-283, gnl|Hg17|chr6 (32923850-32923671)
               

               
               104-283, gnl|Mm7|chr17 (32294224-32294404)
               


               
               580-1177, gnl|bosTau2|chr23 (5527700-5527120)
               

               
               580-1177, gnl|Hg17|chr6 (32921541-32921009)
               

               
               580-1177, gnl|Mm7|chr17 (32276409-32277011)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-283, gnl|bosTau2|chr23 (5529663-5529484)
               

               
               104-283, gnl|Hg17|chr6 (32923850-32923671)
               

               
               104-283, gnl|Mm7|chr17 (32294224-32294404)
               


               
               580-1177, gnl|bosTau2|chr23 (5527700-5527120)
               

               
               580-1177, gnl|Hg17|chr6 (32921541-32921009)
               

               
               580-1177, gnl|Mm7|chr17 (32276409-32277011)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               ill (0.526778)
               

               
               cly (0.482567)
               

               
               duo (0.345602)
               

               
               cli (0.305623)
               

               
               nmm (0.265604)
               

               
               ece (0.229305)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.526778)
               

               
               cly (0.482567)
               

               
               duo (0.345602)
               

               
               cli (0.305623)
               

               
               nmm (0.265604)
               

               
               ece (0.229305)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

	104-283, gnl\|bosTau2\|chr23 (5529663-5529484)
	104-283, gnl\|Hg17\|chr6 (32923850-32923671)
	104-283, gnl\|Mm7\|chr17 (32294224-32294404)

	580-1177, gnl\|bosTau2\|chr23 (5527700-5527120)
	580-1177, gnl\|Hg17\|chr6 (32921541-32921009)
	580-1177, gnl\|Mm7\|chr17 (32276409-32277011)

	ill (0.526778)
	cly (0.482567)
	duo (0.345602)
	cli (0.305623)
	nmm (0.265604)
	ece (0.229305)
	sto (0.179824)
	cje (0.165235)
	nco (0.161734)
	csp (0.161186)
	cag (0.151194)
	spl (0.143184)
	pty (0.142714)
	lnt (0.142308)
	pla (0.133672)
	clu (0.119646)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	cbl (0.114797)
	jej (0.0989218)