Non-Coding RNA Search

Ss1.1-rpgl22_i13.5.5

Sequence:


               
               CAGATCACCCCTGGCGAAGTGTGTTTCTCGAAATCATCACCGCCATGGACAACAGAGGGT
CGTCACAGAAAGGGTCACTCCTGCTCCTACTGCTGCTGGTGTCAAATCTGTTCTTGTGCA
AGAGCGTGGCCTCCCTGCCCATCTGCCCCAGCGGGGCTGTCAACTGCCAGGTGTCCCTTC
GAGACCTGTTCGACCGTGCAGTCATCCTGTCCCACTACATCCATAACCTCTCTTCGGAAA
TGTTCAACGAATTTGATAAAAGGTATGCCCAGGGCAGAGGGTTCATTACCAAGGCCATCA
ACAGCTGCCACACCTCCTCCCTCTCTACGCCTGAAGACAAAGAGCAAGCCCAACAGATCC
ATCATGAAGTCCTCCTGAACTTGATACTGAGAGTGCTGCGCTCCTGGAATGACCCGCTGT
ATCACCTGGTCACGGAAGTGAGGGGTATGCAGGAAGCCCCAGATGCTATCCTCTCGAGAG
CCATAGAGATCGAGGAACAAAACAAACGGCTTCTAGAAGGCATGGAGAAGATAGTCGGCC
AGGTCCATCCTGGAATCAAGGAGAATGAGGTCTACTCTGTGTGGTCCGGACTTCCCTCCC
TGCAGATGGCTGATGAAGACACTCGCCTTTTTGCTTTTTATAACCTGCTCCACTGCCTAC
GCAGGGATTCACATAAGATTGACAATTATCTCAAGCTTCTCAAGTGCCGAATCATCTACG
ACAGCAACTGCTAAGCCCACGTCCATCCCGTCTGTTTCTTAACTGTTTCTTAACGCTCCA
TCCCATAGAAAGATTCTTTTAGTTTTATAGCTTTTTAATGCATGCTTGGGTGTAACGCAT
CTCCTCTTAAAAAAATAAAGACTCCGTAGAGATGTCAAAAATCTTAAAAAGCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATCACCCCTGGCGAAGTGTGTTTCTCGAAATCATCACCGCCATGGACAACAGAGGGT
CGTCACAGAAAGGGTCACTCCTGCTCCTACTGCTGCTGGTGTCAAATCTGTTCTTGTGCA
AGAGCGTGGCCTCCCTGCCCATCTGCCCCAGCGGGGCTGTCAACTGCCAGGTGTCCCTTC
GAGACCTGTTCGACCGTGCAGTCATCCTGTCCCACTACATCCATAACCTCTCTTCGGAAA
TGTTCAACGAATTTGATAAAAGGTATGCCCAGGGCAGAGGGTTCATTACCAAGGCCATCA
ACAGCTGCCACACCTCCTCCCTCTCTACGCCTGAAGACAAAGAGCAAGCCCAACAGATCC
ATCATGAAGTCCTCCTGAACTTGATACTGAGAGTGCTGCGCTCCTGGAATGACCCGCTGT
ATCACCTGGTCACGGAAGTGAGGGGTATGCAGGAAGCCCCAGATGCTATCCTCTCGAGAG
CCATAGAGATCGAGGAACAAAACAAACGGCTTCTAGAAGGCATGGAGAAGATAGTCGGCC
AGGTCCATCCTGGAATCAAGGAGAATGAGGTCTACTCTGTGTGGTCCGGACTTCCCTCCC
TGCAGATGGCTGATGAAGACACTCGCCTTTTTGCTTTTTATAACCTGCTCCACTGCCTAC
GCAGGGATTCACATAAGATTGACAATTATCTCAAGCTTCTCAAGTGCCGAATCATCTACG
ACAGCAACTGCTAAGCCCACGTCCATCCCGTCTGTTTCTTAACTGTTTCTTAACGCTCCA
TCCCATAGAAAGATTCTTTTAGTTTTATAGCTTTTTAATGCATGCTTGGGTGTAACGCAT
CTCCTCTTAAAAAAATAAAGACTCCGTAGAGATGTCAAAAATCTTAAAAAGCAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               PRL_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               PRL_PIG

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               71-255, gnl|bosTau2|chr12 (36191898-36191718)
               

               
               71-255, gnl|Hg17|chr6 (22402794-22402616)
               

               
               71-255, gnl|Mm7|chr13 (26424930-26425102)
               


               
               364-533, gnl|bosTau2|chr23 (28184410-28184241)
               

               
               364-533, gnl|Hg17|chr6 (22398560-22398392)
               

               
               364-533, gnl|Mm7|chr13 (26429815-26429983)
               


               
               541-894, gnl|bosTau2|chr12 (36296372-36296020)
               

               
               541-894, gnl|Hg17|chr6 (22395803-22395448)
               

               
               541-894, gnl|Mm7|chr13 (26430404-26430755)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-255, gnl|bosTau2|chr12 (36191898-36191718)
               

               
               71-255, gnl|Hg17|chr6 (22402794-22402616)
               

               
               71-255, gnl|Mm7|chr13 (26424930-26425102)
               


               
               364-533, gnl|bosTau2|chr23 (28184410-28184241)
               

               
               364-533, gnl|Hg17|chr6 (22398560-22398392)
               

               
               364-533, gnl|Mm7|chr13 (26429815-26429983)
               


               
               541-894, gnl|bosTau2|chr12 (36296372-36296020)
               

               
               541-894, gnl|Hg17|chr6 (22395803-22395448)
               

               
               541-894, gnl|Mm7|chr13 (26430404-26430755)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (47.3934)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (47.3934)

	71-255, gnl\|bosTau2\|chr12 (36191898-36191718)
	71-255, gnl\|Hg17\|chr6 (22402794-22402616)
	71-255, gnl\|Mm7\|chr13 (26424930-26425102)

	364-533, gnl\|bosTau2\|chr23 (28184410-28184241)
	364-533, gnl\|Hg17\|chr6 (22398560-22398392)
	364-533, gnl\|Mm7\|chr13 (26429815-26429983)

	541-894, gnl\|bosTau2\|chr12 (36296372-36296020)
	541-894, gnl\|Hg17\|chr6 (22395803-22395448)
	541-894, gnl\|Mm7\|chr13 (26430404-26430755)