Non-Coding RNA Search

Ss1.1-rpgl22_i6.5

Sequence:


               
               CTCAGGCAGCCACTCCCGTGGGCACACGCCCAGGAGCTGTTCCTGCCCCGCGCTCCCTCC
CTCCACCTTTCACTTCCCAGCCGCAAACATCTCGGAAGCTTTGAAACTCAGCAAAGAAGG
GAAATCCACTGAGAACAGTCTGTTAAGCATCCAGCAATATCCAGCTATTACCCGCAGTCT
GCCCATCTCCTGGGAAACCCAAAATTCTTCCATTGGGTATTCCAGGACTTCCTGCCTGCA
GAGACCCTCAGTAGAAGCACTGCACGCCCTGCTGTGAACACTTCCTGGAGGTTCAGAGAG
ACAACATTCTCTGCCCTGCTTGGTGACCCAGGAGACTGACCTCTAAAGACTGCATCACCA
GGCTCTCATGACTGCAGCTTCTAGACTGTTTTTGTCACTGGGAGATCCTGGAAAGAGATC
AGACCTCGACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGGCAGCCACTCCCGTGGGCACACGCCCAGGAGCTGTTCCTGCCCCGCGCTCCCTCC
CTCCACCTTTCACTTCCCAGCCGCAAACATCTCGGAAGCTTTGAAACTCAGCAAAGAAGG
GAAATCCACTGAGAACAGTCTGTTAAGCATCCAGCAATATCCAGCTATTACCCGCAGTCT
GCCCATCTCCTGGGAAACCCAAAATTCTTCCATTGGGTATTCCAGGACTTCCTGCCTGCA
GAGACCCTCAGTAGAAGCACTGCACGCCCTGCTGTGAACACTTCCTGGAGGTTCAGAGAG
ACAACATTCTCTGCCCTGCTTGGTGACCCAGGAGACTGACCTCTAAAGACTGCATCACCA
GGCTCTCATGACTGCAGCTTCTAGACTGTTTTTGTCACTGGGAGATCCTGGAAAGAGATC
AGACCTCGACTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-121, - strand, RNAz p=0.995358

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-121, - strand, RNAz p=0.995358

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               37-143, - strand, RNAmicro p=0.999839

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               37-143, - strand, RNAmicro p=0.999839

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-147, gnl|bosTau2|chr8 (1433618-1433474)
               

               
               2-147, gnl|Hg17|chr1 (68865510-68865393)
               


               
               299-422, gnl|bosTau2|chr22 (31134929-31134805)
               

               
               299-422, gnl|canFam2|chr20 (33256753-33256547)
               

               
               299-422, gnl|echTel1|scaffold_321234 (1130-927)
               

               
               299-422, gnl|hg17|chr3 (60602802-60603027)
               

               
               299-422, gnl|Hg17|chr3 (60603011-60602896)
               

               
               299-422, gnl|loxAfr1|scaffold_40563 (17732-17516)
               

               
               299-422, gnl|mm7|chr14 (8379875-8380087)
               

               
               299-422, gnl|oryCun1|scaffold_208571 (70791-71023)
               

               
               299-422, gnl|panTro1|chr2 (62378745-62378967)
               

               
               299-422, gnl|rheMac2|chr2 (75724882-75724656)
               

               
               299-422, gnl|rn3|chr15 (16391383-16391171)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-147, gnl|bosTau2|chr8 (1433618-1433474)
               

               
               2-147, gnl|Hg17|chr1 (68865510-68865393)
               


               
               299-422, gnl|bosTau2|chr22 (31134929-31134805)
               

               
               299-422, gnl|canFam2|chr20 (33256753-33256547)
               

               
               299-422, gnl|echTel1|scaffold_321234 (1130-927)
               

               
               299-422, gnl|hg17|chr3 (60602802-60603027)
               

               
               299-422, gnl|Hg17|chr3 (60603011-60602896)
               

               
               299-422, gnl|loxAfr1|scaffold_40563 (17732-17516)
               

               
               299-422, gnl|mm7|chr14 (8379875-8380087)
               

               
               299-422, gnl|oryCun1|scaffold_208571 (70791-71023)
               

               
               299-422, gnl|panTro1|chr2 (62378745-62378967)
               

               
               299-422, gnl|rheMac2|chr2 (75724882-75724656)
               

               
               299-422, gnl|rn3|chr15 (16391383-16391171)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.132153)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               pgl (0.118483)

	2-147, gnl\|bosTau2\|chr8 (1433618-1433474)
	2-147, gnl\|Hg17\|chr1 (68865510-68865393)

	299-422, gnl\|bosTau2\|chr22 (31134929-31134805)
	299-422, gnl\|canFam2\|chr20 (33256753-33256547)
	299-422, gnl\|echTel1\|scaffold_321234 (1130-927)
	299-422, gnl\|hg17\|chr3 (60602802-60603027)
	299-422, gnl\|Hg17\|chr3 (60603011-60602896)
	299-422, gnl\|loxAfr1\|scaffold_40563 (17732-17516)
	299-422, gnl\|mm7\|chr14 (8379875-8380087)
	299-422, gnl\|oryCun1\|scaffold_208571 (70791-71023)
	299-422, gnl\|panTro1\|chr2 (62378745-62378967)
	299-422, gnl\|rheMac2\|chr2 (75724882-75724656)
	299-422, gnl\|rn3\|chr15 (16391383-16391171)