Non-Coding RNA Search

Ss1.1-rpgl22_k20.5

Sequence:


               
               AAAGGATTAACCCCCCTCCCCCCCACCCACCCAGGATGCTGGCAAGAAAATGTGTTCATT
TCTTAAGTCTTCATTTGGTTTTCTTGTTCAGAGTTTTAATTGCAAATGAGTTTATTTCTC
CAGCTTATGAAAGATCTAATTTCCCAATAGTTTCCTCTGCATTTATATACTCTGTAGTGT
TTAGGCAACCCCTGTTATAAGTTTATTAATATTATGTAAGTGTTGTTCTTGTATTTATGT
ATAGTGTATGTATTGTAAATATACTCAGAGCTTTTTTCCTTTTACTGTAAAATTGTGATT
TTTTTTTTTTTTTTTTTTGCCCTATGATAATGTAAAGGGAGACCCTCCTAATGAGATTCT
CTCAGAGGATGATTATTCCAGTCTATTCTCAGAGGTTTAAATGAACAAGTGTTATCGTTT
TTAATGGTGTCTCAGACATATTCTGTTGGTGCATTGCTTTTCTGTATTCAACTTTCCTAT
GAATTGAGCTGTGAACCGAAATAGAGTTTAAACCTTTAACTGTATGCATTTGTATAATTA
TCTGAATGAAGGCATGAAGGTTAAATAAAGCATTTTGTATGGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGGATTAACCCCCCTCCCCCCCACCCACCCAGGATGCTGGCAAGAAAATGTGTTCATT
TCTTAAGTCTTCATTTGGTTTTCTTGTTCAGAGTTTTAATTGCAAATGAGTTTATTTCTC
CAGCTTATGAAAGATCTAATTTCCCAATAGTTTCCTCTGCATTTATATACTCTGTAGTGT
TTAGGCAACCCCTGTTATAAGTTTATTAATATTATGTAAGTGTTGTTCTTGTATTTATGT
ATAGTGTATGTATTGTAAATATACTCAGAGCTTTTTTCCTTTTACTGTAAAATTGTGATT
TTTTTTTTTTTTTTTTTTGCCCTATGATAATGTAAAGGGAGACCCTCCTAATGAGATTCT
CTCAGAGGATGATTATTCCAGTCTATTCTCAGAGGTTTAAATGAACAAGTGTTATCGTTT
TTAATGGTGTCTCAGACATATTCTGTTGGTGCATTGCTTTTCTGTATTCAACTTTCCTAT
GAATTGAGCTGTGAACCGAAATAGAGTTTAAACCTTTAACTGTATGCATTTGTATAATTA
TCTGAATGAAGGCATGAAGGTTAAATAAAGCATTTTGTATGGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               66-184, - strand, RNAz p=0.990819
               

               
               225-344, + strand, RNAz p=0.851525

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               66-184, - strand, RNAz p=0.990819
               

               
               225-344, + strand, RNAz p=0.851525

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_007249, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_007249, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               27-589, gnl|bosTau2|chr12 (24424758-24425317)
               

               
               27-589, gnl|Hg17|chr13 (73158775-73158227)
               

               
               27-589, gnl|Mm7|chr14 (94270331-94269787)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-589, gnl|bosTau2|chr12 (24424758-24425317)
               

               
               27-589, gnl|Hg17|chr13 (73158775-73158227)
               

               
               27-589, gnl|Mm7|chr14 (94270331-94269787)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)
               

               
               ebs (0.118301)

	66-184, - strand, RNAz p=0.990819
	225-344, + strand, RNAz p=0.851525

	27-589, gnl\|bosTau2\|chr12 (24424758-24425317)
	27-589, gnl\|Hg17\|chr13 (73158775-73158227)
	27-589, gnl\|Mm7\|chr14 (94270331-94269787)