Ss1.1-rpgl22_p15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTCTCCACGGTTACCACGGCTCTTCGCCCCTCCTTCCCGTGGCGCTCGGGGGACCATGG CCGATCCTCGCGTGAGGCAGATCAAGATCAAAACCGGCGTGGTGAAGCGATTGGTTAAAG AAAAAGTGATGTATGAAAAAGAAGCAAAACAACAAGAAGAAAAGATTGAAAAAATGAAAG CTGAAGATGGTGAGAATTATGCTATTAAAAAGCAGGCAGAGATCCTGCAAGAGTCCCGGA TGATGATCCCAGATTGCCAGCGCAGGTTGGAAGCTGCATATACCGATCTTCTGCAGTTAC TAGAGAGTGAAAAAGACTTGGAAGAAGCTGAGGAATATAAGGAGGCACGTTTAGTACTGG ATTCAGTGAAGTTAGAAGCCTAAAGTTTTTCTGTATAGAGTGTTTTTTGCATTAAATCCT GGGATCCATTCCACAATTCATTATTTTTGACCACTGCTATGTGTTCGAGTAGTATGAAAA TGCGATTCTTTTTATGCAGTGCATATATTTTTCTTTGCCTAATTTAATGTGTCAAATAAA TGAGTTCATCTAATAAAATTGCTTCTTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTCTCCACGGTTACCACGGCTCTTCGCCCCTCCTTCCCGTGGCGCTCGGGGGACCATGG CCGATCCTCGCGTGAGGCAGATCAAGATCAAAACCGGCGTGGTGAAGCGATTGGTTAAAG AAAAAGTGATGTATGAAAAAGAAGCAAAACAACAAGAAGAAAAGATTGAAAAAATGAAAG CTGAAGATGGTGAGAATTATGCTATTAAAAAGCAGGCAGAGATCCTGCAAGAGTCCCGGA TGATGATCCCAGATTGCCAGCGCAGGTTGGAAGCTGCATATACCGATCTTCTGCAGTTAC TAGAGAGTGAAAAAGACTTGGAAGAAGCTGAGGAATATAAGGAGGCACGTTTAGTACTGG ATTCAGTGAAGTTAGAAGCCTAAAGTTTTTCTGTATAGAGTGTTTTTTGCATTAAATCCT GGGATCCATTCCACAATTCATTATTTTTGACCACTGCTATGTGTTCGAGTAGTATGAAAA TGCGATTCTTTTTATGCAGTGCATATATTTTTCTTTGCCTAATTTAATGTGTCAAATAAA TGAGTTCATCTAATAAAATTGCTTCTTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 27-581, gnl|bosTau2|chr8 (8536148-8535594) | |
| 27-581, gnl|Hg17|chrX (32819139-32819672) | |
| 27-581, gnl|Mm7|chr16 (3992275-3991746) | |
| 109-216, gnl|bosTau2|chr10 (2732621-2732514) | |
| 109-216, gnl|canFam2|chr3 (31892691-31892566) | |
| 109-216, gnl|dasNov1|scaffold_5273 (61807-61682) | |
| 109-216, gnl|echTel1|scaffold_313970 (530-650) | |
| 109-216, gnl|fr1|chrUn (221345408-221345296) | |
| 109-216, gnl|galGal2|chr13_random (354306-354430) | |
| 109-216, gnl|hg17|chr5 (77039819-77039944) | |
| 109-216, gnl|Hg17|chr5 (77039929-77039822) | |
| 109-216, gnl|loxAfr1|scaffold_72827 (8810-8685) | |
| 109-216, gnl|mm7|chr13 (91895461-91895337) | |
| 109-216, gnl|Mm7|chr13 (91895350-91895457) | |
| 109-216, gnl|monDom2|scaffold_27 (38791158-38791033) | |
| 109-216, gnl|oryCun1|scaffold_176287 (42601-42477) | |
| 109-216, gnl|panTro1|chr4_random (45191306-45191181) | |
| 109-216, gnl|rheMac2|chr6 (73928701-73928826) | |
| 109-216, gnl|rn3|chr7 (141735551-141735440) | |
| 303-572, gnl|bosTau2|chr10 (2719256-2718992) | |
| 303-572, gnl|Hg17|chr5 (77023079-77022808) | |
| 303-572, gnl|Mm7|chr13 (91905641-91905909) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 27-581, gnl|bosTau2|chr8 (8536148-8535594) | |
| 27-581, gnl|Hg17|chrX (32819139-32819672) | |
| 27-581, gnl|Mm7|chr16 (3992275-3991746) | |
| 109-216, gnl|bosTau2|chr10 (2732621-2732514) | |
| 109-216, gnl|canFam2|chr3 (31892691-31892566) | |
| 109-216, gnl|dasNov1|scaffold_5273 (61807-61682) | |
| 109-216, gnl|echTel1|scaffold_313970 (530-650) | |
| 109-216, gnl|fr1|chrUn (221345408-221345296) | |
| 109-216, gnl|galGal2|chr13_random (354306-354430) | |
| 109-216, gnl|hg17|chr5 (77039819-77039944) | |
| 109-216, gnl|Hg17|chr5 (77039929-77039822) | |
| 109-216, gnl|loxAfr1|scaffold_72827 (8810-8685) | |
| 109-216, gnl|mm7|chr13 (91895461-91895337) | |
| 109-216, gnl|Mm7|chr13 (91895350-91895457) | |
| 109-216, gnl|monDom2|scaffold_27 (38791158-38791033) | |
| 109-216, gnl|oryCun1|scaffold_176287 (42601-42477) | |
| 109-216, gnl|panTro1|chr4_random (45191306-45191181) | |
| 109-216, gnl|rheMac2|chr6 (73928701-73928826) | |
| 109-216, gnl|rn3|chr7 (141735551-141735440) | |
| 303-572, gnl|bosTau2|chr10 (2719256-2718992) | |
| 303-572, gnl|Hg17|chr5 (77023079-77022808) | |
| 303-572, gnl|Mm7|chr13 (91905641-91905909) |
| Expressed library(ies): 55 entry(ies) | More info |
| Expressed library(ies): 55 entry(ies) | Help | Less info |
| cte (3.22014) | |
| mgp (1.38408) | |
| ova (1.29132) | |
| cbe (1.19617) | |
| sto (1.07894) | |
| spc (1.02029) | |
| vin (0.997672) | |
| cmu (0.931966) | |
| sug (0.891039) | |
| fco (0.78604) | |
| aor (0.781097) | |
| cje (0.660939) | |
| thg (0.633955) | |
| pgl (0.592417) | |
| cut (0.509771) | |
| mga (0.480615) | |
| isp (0.451128) | |
| fat (0.442282) | |
| eje (0.395335) | |
| col (0.390016) | |
| nep (0.36785) | |
| rec (0.346141) | |
| nje (0.33184) | |
| cki (0.330469) | |
| csk (0.281492) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| nmm (0.265604) | |
| kid (0.259471) | |
| pan (0.23596) | |
| ece (0.229305) | |
| jca (0.22792) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) |
| Expressed library(ies): 55 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (3.22014) | |
| mgp (1.38408) | |
| ova (1.29132) | |
| cbe (1.19617) | |
| sto (1.07894) | |
| spc (1.02029) | |
| vin (0.997672) | |
| cmu (0.931966) | |
| sug (0.891039) | |
| fco (0.78604) | |
| aor (0.781097) | |
| cje (0.660939) | |
| thg (0.633955) | |
| pgl (0.592417) | |
| cut (0.509771) | |
| mga (0.480615) | |
| isp (0.451128) | |
| fat (0.442282) | |
| eje (0.395335) | |
| col (0.390016) | |
| nep (0.36785) | |
| rec (0.346141) | |
| nje (0.33184) | |
| cki (0.330469) | |
| csk (0.281492) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| nmm (0.265604) | |
| kid (0.259471) | |
| pan (0.23596) | |
| ece (0.229305) | |
| jca (0.22792) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) |