Non-Coding RNA Search

Ss1.1-rpgl23_d22.5

Sequence:


               
               CCACCCACAGCCTATTTGTTTAGGGCAGTGGGAATCTGTCTCCACCCCTTGCTTTACCTT
CTCCCCTTGCTGCCAGCCAGTGGGGCAACAGTTCCTCCTTTTCCAGGACTATGGCCACAG
GCCGGGGCCAAGCTTCAGATCAGGGCTGCTTCTTAGCTGGGGTCACTCTGGGGAATCTGC
TGCTCTGCATCCAAGTGTGGATCTTTCAGATCCTTGGCTCTGGGTTTTCTGAGGAGGGGA
GACAGTGACTTCAGGGTTCCCACACATCACCTCATTATTTCCTAAACAGCAAAGCAGCCA
AGTATCCCAGGGCCACTACTCCATTGCTCTGGGGGCTGGGATGCCTGGCTGCAGAAGTAG
GGAGGCTACTGAGTGGCTGGTGACTTTCCTGGGGTTAGCACCTGCCCTGTGTTTTGTACC
TTCAGCCTAAGACACATTAAACATCTCTCAAATGGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCCACAGCCTATTTGTTTAGGGCAGTGGGAATCTGTCTCCACCCCTTGCTTTACCTT
CTCCCCTTGCTGCCAGCCAGTGGGGCAACAGTTCCTCCTTTTCCAGGACTATGGCCACAG
GCCGGGGCCAAGCTTCAGATCAGGGCTGCTTCTTAGCTGGGGTCACTCTGGGGAATCTGC
TGCTCTGCATCCAAGTGTGGATCTTTCAGATCCTTGGCTCTGGGTTTTCTGAGGAGGGGA
GACAGTGACTTCAGGGTTCCCACACATCACCTCATTATTTCCTAAACAGCAAAGCAGCCA
AGTATCCCAGGGCCACTACTCCATTGCTCTGGGGGCTGGGATGCCTGGCTGCAGAAGTAG
GGAGGCTACTGAGTGGCTGGTGACTTTCCTGGGGTTAGCACCTGCCCTGTGTTTTGTACC
TTCAGCCTAAGACACATTAAACATCTCTCAAATGGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               176-440, - strand, RNAz p=0.958271
               

               
               238-355, + strand, RNAz p=0.928155

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               176-440, - strand, RNAz p=0.958271
               

               
               238-355, + strand, RNAz p=0.928155

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF111173, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF111173, +

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               3-456, gnl|bosTau2|chr18 (28714418-28713968)
               

               
               3-456, gnl|canFam2|chr5 (85117367-85116365)
               

               
               3-456, gnl|dasNov1|scaffold_205864 (1274-267)
               

               
               3-456, gnl|hg17|chr16 (65862635-65863648)
               

               
               3-456, gnl|Hg17|chr16 (65863145-65863595)
               

               
               3-456, gnl|mm7|chr8 (103967134-103968038)
               

               
               3-456, gnl|Mm7|chr8 (103967584-103967986)
               

               
               3-456, gnl|monDom2|scaffold_23 (19596952-19595690)
               

               
               3-456, gnl|oryCun1|scaffold_89602 (5343-6248)
               

               
               3-456, gnl|panTro1|chr18 (60122360-60123373)
               

               
               3-456, gnl|rn3|chr19 (35188161-35189076)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-456, gnl|bosTau2|chr18 (28714418-28713968)
               

               
               3-456, gnl|canFam2|chr5 (85117367-85116365)
               

               
               3-456, gnl|dasNov1|scaffold_205864 (1274-267)
               

               
               3-456, gnl|hg17|chr16 (65862635-65863648)
               

               
               3-456, gnl|Hg17|chr16 (65863145-65863595)
               

               
               3-456, gnl|mm7|chr8 (103967134-103968038)
               

               
               3-456, gnl|Mm7|chr8 (103967584-103967986)
               

               
               3-456, gnl|monDom2|scaffold_23 (19596952-19595690)
               

               
               3-456, gnl|oryCun1|scaffold_89602 (5343-6248)
               

               
               3-456, gnl|panTro1|chr18 (60122360-60123373)
               

               
               3-456, gnl|rn3|chr19 (35188161-35189076)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               pgl (0.118483)

	176-440, - strand, RNAz p=0.958271
	238-355, + strand, RNAz p=0.928155

	3-456, gnl\|bosTau2\|chr18 (28714418-28713968)
	3-456, gnl\|canFam2\|chr5 (85117367-85116365)
	3-456, gnl\|dasNov1\|scaffold_205864 (1274-267)
	3-456, gnl\|hg17\|chr16 (65862635-65863648)
	3-456, gnl\|Hg17\|chr16 (65863145-65863595)
	3-456, gnl\|mm7\|chr8 (103967134-103968038)
	3-456, gnl\|Mm7\|chr8 (103967584-103967986)
	3-456, gnl\|monDom2\|scaffold_23 (19596952-19595690)
	3-456, gnl\|oryCun1\|scaffold_89602 (5343-6248)
	3-456, gnl\|panTro1\|chr18 (60122360-60123373)
	3-456, gnl\|rn3\|chr19 (35188161-35189076)