Ss1.1-rpgl23_j16.5.5
|
CTGCACCGATTTCGAAATTCTTGGGGACAGGACCTTCGTGGTTACTGATTCTTAACTAGT
GATGGTGTTCCTCCGTGCTGGGGGGACGTTTCGGAGTTAACAGCTTGACTCCCTGATGCT
GTCCGGCCTCTGCCGCCGGCAGAGGGGCGAGATGCGCGGGAATGGGGGTGGCAGAGGTAC
AGGCAGTTTGTGGTCGGTGCTGACCTTTTCCAGTAAGCGGCCTGAGGTGACCTCTAAAAA
TGGTTCGCTATTCACTCGACCCAGAAAACCCCACAAAATCATGCAAATCAAGAGGTTCAA
ATCTTCGTGTTCACTTTAAGAACACTCGTGAAACTGCCCAGGCCATTAAGGGTATGCATA
TTCGAAAAGCCACCAAGTATCTGAAAGACGTCACTCTACAGAAGCAATGTGTGCCATTCC
GTCGTTACAATGGTGGAGTCGGTAGGTGTGCCCAGGCCAAACAGTGGGGCTGGACACAGG
GTCGGTGGCCCAAAAAGAGTGCTGAATTTTTATTGCACATGCTTAAAAATGCAGAGAGTA
ATGCTGAACTTAAGGGCTTAGATGTAGATTCTCTGGTCATTGAGCACATCCAGGTGAACA
AAGCCCCCAAAATGCGGCGTAGGACTTACAGAGCTCATGGTCGAATCAACCCTTACATGA
GTTCTCCCTGCCACATTGAGATGATCCTTACTGAAAAAGAGCAGATTGTTCCTAAGCCAG
AAGAGGAGGTTGCACAGAAGAAAAAGATATCCCAGAAGAAACTGAAGAAGCAAAAACTTA
TGGCCCGGGAATAAATTTCACAAAAATAAATGCAAATAATAGTAAAAGAAAAAAAAAAAA
TTAATTAGTATGTTTCAAATGCACTCACAAAATGAAATAAGCTTACATAAGCATGCTGTT
TTGAATCTTCTGGTGCCTTGCATAAAATGGAATTAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGCACCGATTTCGAAATTCTTGGGGACAGGACCTTCGTGGTTACTGATTCTTAACTAGT
GATGGTGTTCCTCCGTGCTGGGGGGACGTTTCGGAGTTAACAGCTTGACTCCCTGATGCT
GTCCGGCCTCTGCCGCCGGCAGAGGGGCGAGATGCGCGGGAATGGGGGTGGCAGAGGTAC
AGGCAGTTTGTGGTCGGTGCTGACCTTTTCCAGTAAGCGGCCTGAGGTGACCTCTAAAAA
TGGTTCGCTATTCACTCGACCCAGAAAACCCCACAAAATCATGCAAATCAAGAGGTTCAA
ATCTTCGTGTTCACTTTAAGAACACTCGTGAAACTGCCCAGGCCATTAAGGGTATGCATA
TTCGAAAAGCCACCAAGTATCTGAAAGACGTCACTCTACAGAAGCAATGTGTGCCATTCC
GTCGTTACAATGGTGGAGTCGGTAGGTGTGCCCAGGCCAAACAGTGGGGCTGGACACAGG
GTCGGTGGCCCAAAAAGAGTGCTGAATTTTTATTGCACATGCTTAAAAATGCAGAGAGTA
ATGCTGAACTTAAGGGCTTAGATGTAGATTCTCTGGTCATTGAGCACATCCAGGTGAACA
AAGCCCCCAAAATGCGGCGTAGGACTTACAGAGCTCATGGTCGAATCAACCCTTACATGA
GTTCTCCCTGCCACATTGAGATGATCCTTACTGAAAAAGAGCAGATTGTTCCTAAGCCAG
AAGAGGAGGTTGCACAGAAGAAAAAGATATCCCAGAAGAAACTGAAGAAGCAAAAACTTA
TGGCCCGGGAATAAATTTCACAAAAATAAATGCAAATAATAGTAAAAGAAAAAAAAAAAA
TTAATTAGTATGTTTCAAATGCACTCACAAAATGAAATAAGCTTACATAAGCATGCTGTT
TTGAATCTTCTGGTGCCTTGCATAAAATGGAATTAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
eje (6.7207) |
|
thg (5.95917) |
|
med (5.23134) |
|
pgl (5.09479) |
|
lyg (4.79169) |
|
bla (4.72519) |
|
nca (4.65371) |
|
elu (4.62428) |
|
lnt (3.55771) |
|
sag (3.47159) |
|
mgp (3.46021) |
|
gul (3.37418) |
|
ecc (3.33602) |
|
ova (3.09917) |
|
fat (3.09598) |
|
hea (3.06748) |
|
ste (2.97458) |
|
tra (2.95421) |
|
amn (2.92398) |
|
ece (2.75166) |
|
nje (2.65472) |
|
fty (2.63759) |
|
ssp (2.57487) |
|
eru (2.52101) |
|
ski (2.4945) |
|
sug (2.41853) |
|
nmm (2.39044) |
|
ebs (2.36602) |
|
aor (2.34329) |
|
ese (2.27704) |
|
sin (2.27432) |
|
nco (2.26427) |
|
hlv (2.2281) |
|
col (2.14509) |
|
jca (2.05128) |
|
pro (2.04813) |
|
eye (2.04604) |
|
pty (1.998) |
|
vin (1.99534) |
|
cag (1.96553) |
|
mcp (1.87713) |
|
eep (1.83846) |
|
sme (1.83262) |
|
fcc (1.78006) |
|
fbs (1.75346) |
|
cut (1.69924) |
|
csk (1.68895) |
|
cbe (1.67464) |
|
che (1.63577) |
|
fli (1.62305) |
|
csp (1.61186) |
|
nbm (1.58919) |
|
spc (1.58712) |
|
ill (1.58033) |
|
ton (1.5795) |
|
ldo (1.55204) |
|
nlu (1.53345) |
|
mgm (1.44274) |
|
fce (1.35796) |
|
fhi (1.35662) |
|
ute (1.32784) |
|
nep (1.28747) |
|
nms (1.28315) |
|
cst (1.26033) |
|
rec (1.21149) |
|
eli (1.0627) |
|
cki (0.991408) |
|
cje (0.991408) |
|
jej (0.989218) |
|
cly (0.965135) |
|
pan (0.943841) |
|
fco (0.943248) |
|
isp (0.902256) |
|
lin (0.873617) |
|
mga (0.801025) |
|
cli (0.764059) |
|
hyp (0.714184) |
|
lun (0.601956) |
|
bfe (0.599431) |
|
cte (0.58548) |
|
cga (0.558191) |
|
duo (0.518403) |
|
ret (0.514933) |
|
mas (0.42061) |
|
tes (0.415628) |
|
pla (0.401016) |
|
cov (0.396458) |
|
spl (0.286369) |
|
kid (0.259471) |
|
cty (0.20816) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
clu (0.119646) |
|
eje (6.7207) |
|
thg (5.95917) |
|
med (5.23134) |
|
pgl (5.09479) |
|
lyg (4.79169) |
|
bla (4.72519) |
|
nca (4.65371) |
|
elu (4.62428) |
|
lnt (3.55771) |
|
sag (3.47159) |
|
mgp (3.46021) |
|
gul (3.37418) |
|
ecc (3.33602) |
|
ova (3.09917) |
|
fat (3.09598) |
|
hea (3.06748) |
|
ste (2.97458) |
|
tra (2.95421) |
|
amn (2.92398) |
|
ece (2.75166) |
|
nje (2.65472) |
|
fty (2.63759) |
|
ssp (2.57487) |
|
eru (2.52101) |
|
ski (2.4945) |
|
sug (2.41853) |
|
nmm (2.39044) |
|
ebs (2.36602) |
|
aor (2.34329) |
|
ese (2.27704) |
|
sin (2.27432) |
|
nco (2.26427) |
|
hlv (2.2281) |
|
col (2.14509) |
|
jca (2.05128) |
|
pro (2.04813) |
|
eye (2.04604) |
|
pty (1.998) |
|
vin (1.99534) |
|
cag (1.96553) |
|
mcp (1.87713) |
|
eep (1.83846) |
|
sme (1.83262) |
|
fcc (1.78006) |
|
fbs (1.75346) |
|
cut (1.69924) |
|
csk (1.68895) |
|
cbe (1.67464) |
|
che (1.63577) |
|
fli (1.62305) |
|
csp (1.61186) |
|
nbm (1.58919) |
|
spc (1.58712) |
|
ill (1.58033) |
|
ton (1.5795) |
|
ldo (1.55204) |
|
nlu (1.53345) |
|
mgm (1.44274) |
|
fce (1.35796) |
|
fhi (1.35662) |
|
ute (1.32784) |
|
nep (1.28747) |
|
nms (1.28315) |
|
cst (1.26033) |
|
rec (1.21149) |
|
eli (1.0627) |
|
cki (0.991408) |
|
cje (0.991408) |
|
jej (0.989218) |
|
cly (0.965135) |
|
pan (0.943841) |
|
fco (0.943248) |
|
isp (0.902256) |
|
lin (0.873617) |
|
mga (0.801025) |
|
cli (0.764059) |
|
hyp (0.714184) |
|
lun (0.601956) |
|
bfe (0.599431) |
|
cte (0.58548) |
|
cga (0.558191) |
|
duo (0.518403) |
|
ret (0.514933) |
|
mas (0.42061) |
|
tes (0.415628) |
|
pla (0.401016) |
|
cov (0.396458) |
|
spl (0.286369) |
|
kid (0.259471) |
|
cty (0.20816) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
clu (0.119646) |
