Ss1.1-rpgl25_a8.5
|
GTTACCAGTGTTCATGCCCGAAAGGCTACATCCTGCAGGAAGATGGAAGAAGCTGTAAAG
ATCTCGATGAGTGTGCAACTAAGCAGCACAACTGCCAGTTTCTGTGTGTCAATACCATTG
GCAGCTTCGCTTGCAAATGTCCTCCTGGATTTACCCAGCACCATACTGCCTGCATTGATA
ACAATGAATGCACTTCTGACATCAACCTGTGTGGGGCTAAGGGCATTTGCCAAAATACTC
CTGGAAGCTTCACTTGTGAATGCCAGCGAGGATTCTCACTTGATCAGAGTGGCGCCAGCT
GTGAAGATGTGGACGAGTGTGAAGGAAACCACCGCTGCCAGCACGGCTGCCAGAACATCA
TCGGGGGCTACAGGTGCAGCTGCCCTCAGGGGTATCTCCAGCACTACCAGTGGAACCAGT
GTGTTGATGAAAACGAATGTCTCAGTGCTCACATTTGCGGAGGAGCCTCCTGTCACAACA
CCCTGGGGAGCTACAAGTGCATGTGTCCTGCTGGCTTCCAGTATGAACAGTTCAGTGGGG
GGTGCCAAGACATCAATGAATGTGGCTCTTCTCAGGCCCCCTGCAGTTATGGCTGTTCCA
ATACTGAGGGTGGCTACCTGTGTGGCTGTCCACCGGGCTACTTCCGAATAGGCCAAGGGC
ACTGTGTTTCTGGGATGGGCATGGGCCGAGGAAGCCCAGAGCCACCTGCCAGTGGTGAAA
TGGATGACAACTCACTCTCCCCAGAGGCTTGTTATGAGTGTAAGATCAATGGCTACCCCA
AACGGGGCAGGAAGCGGAGAAGTACGAACGAAACAGATGCCTTCAACATTGAGGATCAGC
CTGAGACAGAATCCAATGTGAGCCTTGCGAGCTGGGATGTGGAGAAGACAGCCGTGTTTG
CTTTCAATATTTCCCACATCAGTAACAAGGTCCGAATCCTAGAACTCCTTCCAGCCCTTA
CAACTCTGACGAATCACAACAGATACTTGATTGAATCTGGAAATGAAAACGGCTTCTTTA
AAATCAACCAAAAGGAAGGGATCAGCTACCTCCACTTCACAAAGAAGAAGCCAGTGGCTG
GAACCTATTCATTACAAATCAGTAGTACTCCACTTTACAAAAAGAAAGAACTTAATCAGC
TAGAAGATAAATATGACAAAGACTACCTCAGTGGTGAACTGGGTGATAATCTGAAGATGA
AAATTCAGATTTTGCTTCATTAATTCACCATCCAGAGACCAAATAATTAAAAAACAAAGA
TAGATAGGTAGACCTGAATTTTTCCCCCAATCAGAATCTTCATATTATAGGTACAGTCTT
TCACCACATAAATTTCTATAAATAAGCACTATTCTTGTATTACCAAAGCAAGGTACAGGT
GACTCCCCTAGTTCAAAACAACCACTTTCTCAGGCTTCTCATGTATGTAGCTAAGCTACT
TTGTCATATATGTTGATTCTCAAAAACTGGGACATGTATTTCCACTGGGGGTTGGCCATT
CATGCTGACATGCCATCCTTCCAGCAGATGTACAGGAATGTGCTTTCAATTGATGGACTG
TTCTTTTTATTTTTTTTTTCAAATTGTAAAACTTTGCTTCTCCAAATACAAGTACTAGGT
TGGCCATTTATAATATCTATTTGGTGCTAGTAAATTCTCAAACTAGATTTATAAATGCAC
TGTAATATTTACACAACTTAGAAACCAAATTACAAGTATTCAGTTCAAATACTTCATTAA
TTTCAATCAACCAAAGTTAGTTCAGTAGCTTATCTCAGTTATGAGTATAATACATTACAT
GTAAATTAAGTGTGTGTATACTGTAATCGTGCTATTTTTTATCATTGAAACATTTATAAA
CTAGAATAATAATGCCCTTAATGTGAGGGTTTGTAATGGTGCTTATTAAGACCAAAGACT
TGTTAAATGTATACACCAAGTGGTAAGGAAATTTCTGTGACTGGCCCACACGCGCAGAGG
TCTGGGAGGACCAGGAAACAACCTCAGCAGCCAGAGGAGCATCAGTGCATCCTTCATCAC
ACCTGTGCAATATGCCAAGATTAGCCTCGGTCATTGCCGTCAACAAGGGGTCCATGTCAT
AAATGTCACAATAAAACAGTCTCTTTTTTTAGTGTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTTACCAGTGTTCATGCCCGAAAGGCTACATCCTGCAGGAAGATGGAAGAAGCTGTAAAG
ATCTCGATGAGTGTGCAACTAAGCAGCACAACTGCCAGTTTCTGTGTGTCAATACCATTG
GCAGCTTCGCTTGCAAATGTCCTCCTGGATTTACCCAGCACCATACTGCCTGCATTGATA
ACAATGAATGCACTTCTGACATCAACCTGTGTGGGGCTAAGGGCATTTGCCAAAATACTC
CTGGAAGCTTCACTTGTGAATGCCAGCGAGGATTCTCACTTGATCAGAGTGGCGCCAGCT
GTGAAGATGTGGACGAGTGTGAAGGAAACCACCGCTGCCAGCACGGCTGCCAGAACATCA
TCGGGGGCTACAGGTGCAGCTGCCCTCAGGGGTATCTCCAGCACTACCAGTGGAACCAGT
GTGTTGATGAAAACGAATGTCTCAGTGCTCACATTTGCGGAGGAGCCTCCTGTCACAACA
CCCTGGGGAGCTACAAGTGCATGTGTCCTGCTGGCTTCCAGTATGAACAGTTCAGTGGGG
GGTGCCAAGACATCAATGAATGTGGCTCTTCTCAGGCCCCCTGCAGTTATGGCTGTTCCA
ATACTGAGGGTGGCTACCTGTGTGGCTGTCCACCGGGCTACTTCCGAATAGGCCAAGGGC
ACTGTGTTTCTGGGATGGGCATGGGCCGAGGAAGCCCAGAGCCACCTGCCAGTGGTGAAA
TGGATGACAACTCACTCTCCCCAGAGGCTTGTTATGAGTGTAAGATCAATGGCTACCCCA
AACGGGGCAGGAAGCGGAGAAGTACGAACGAAACAGATGCCTTCAACATTGAGGATCAGC
CTGAGACAGAATCCAATGTGAGCCTTGCGAGCTGGGATGTGGAGAAGACAGCCGTGTTTG
CTTTCAATATTTCCCACATCAGTAACAAGGTCCGAATCCTAGAACTCCTTCCAGCCCTTA
CAACTCTGACGAATCACAACAGATACTTGATTGAATCTGGAAATGAAAACGGCTTCTTTA
AAATCAACCAAAAGGAAGGGATCAGCTACCTCCACTTCACAAAGAAGAAGCCAGTGGCTG
GAACCTATTCATTACAAATCAGTAGTACTCCACTTTACAAAAAGAAAGAACTTAATCAGC
TAGAAGATAAATATGACAAAGACTACCTCAGTGGTGAACTGGGTGATAATCTGAAGATGA
AAATTCAGATTTTGCTTCATTAATTCACCATCCAGAGACCAAATAATTAAAAAACAAAGA
TAGATAGGTAGACCTGAATTTTTCCCCCAATCAGAATCTTCATATTATAGGTACAGTCTT
TCACCACATAAATTTCTATAAATAAGCACTATTCTTGTATTACCAAAGCAAGGTACAGGT
GACTCCCCTAGTTCAAAACAACCACTTTCTCAGGCTTCTCATGTATGTAGCTAAGCTACT
TTGTCATATATGTTGATTCTCAAAAACTGGGACATGTATTTCCACTGGGGGTTGGCCATT
CATGCTGACATGCCATCCTTCCAGCAGATGTACAGGAATGTGCTTTCAATTGATGGACTG
TTCTTTTTATTTTTTTTTTCAAATTGTAAAACTTTGCTTCTCCAAATACAAGTACTAGGT
TGGCCATTTATAATATCTATTTGGTGCTAGTAAATTCTCAAACTAGATTTATAAATGCAC
TGTAATATTTACACAACTTAGAAACCAAATTACAAGTATTCAGTTCAAATACTTCATTAA
TTTCAATCAACCAAAGTTAGTTCAGTAGCTTATCTCAGTTATGAGTATAATACATTACAT
GTAAATTAAGTGTGTGTATACTGTAATCGTGCTATTTTTTATCATTGAAACATTTATAAA
CTAGAATAATAATGCCCTTAATGTGAGGGTTTGTAATGGTGCTTATTAAGACCAAAGACT
TGTTAAATGTATACACCAAGTGGTAAGGAAATTTCTGTGACTGGCCCACACGCGCAGAGG
TCTGGGAGGACCAGGAAACAACCTCAGCAGCCAGAGGAGCATCAGTGCATCCTTCATCAC
ACCTGTGCAATATGCCAAGATTAGCCTCGGTCATTGCCGTCAACAAGGGGTCCATGTCAT
AAATGTCACAATAAAACAGTCTCTTTTTTTAGTGTA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1171-1231, + strand, RNAmicro p=0.991015 |
|
1194-1294, - strand, RNAmicro p=0.965112 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
1171-1231, + strand, RNAmicro p=0.991015 |
|
1194-1294, - strand, RNAmicro p=0.965112 |
|
426-659, gnl|bosTau2|chr10 (42648445-42648678) |
|
426-659, gnl|canFam2|chr30 (17636174-17636327) |
|
426-659, gnl|danRer3|chrNA (52218903-52219056) |
|
426-659, gnl|dasNov1|scaffold_37349 (38246-38395) |
|
426-659, gnl|echTel1|scaffold_278622 (50307-50144) |
|
426-659, gnl|fr1|chrUn (65130812-65130658) |
|
426-659, gnl|galGal2|chrW (3924700-3924547) |
|
426-659, gnl|hg17|chr15 (46495017-46495170) |
|
426-659, gnl|Hg17|chr15 (46495257-46495024) |
|
426-659, gnl|loxAfr1|scaffold_11001 (2672-2822) |
|
426-659, gnl|mm7|chr2 (125047115-125047268) |
|
426-659, gnl|Mm7|chr2 (125047355-125047122) |
|
426-659, gnl|monDom2|scaffold_12 (20551796-20551647) |
|
426-659, gnl|oryCun1|scaffold_214549 (143089-143246) |
|
426-659, gnl|panTro1|chr16 (46470111-46470264) |
|
426-659, gnl|rheMac2|chr7 (26739926-26740079) |
|
426-659, gnl|rn3|chr3 (112518954-112519107) |
|
426-659, gnl|tetNig1|chr5 (10068734-10068886) |
|
426-659, gnl|xenTro1|scaffold_27 (2739744-2739893) |
| |
|
832-2136, gnl|bosTau2|chr10 (42652540-42653842) |
|
832-2136, gnl|Hg17|chr15 (46490870-46489562) |
|
832-2136, gnl|Mm7|chr2 (125042830-125041529) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
426-659, gnl|bosTau2|chr10 (42648445-42648678) |
|
426-659, gnl|canFam2|chr30 (17636174-17636327) |
|
426-659, gnl|danRer3|chrNA (52218903-52219056) |
|
426-659, gnl|dasNov1|scaffold_37349 (38246-38395) |
|
426-659, gnl|echTel1|scaffold_278622 (50307-50144) |
|
426-659, gnl|fr1|chrUn (65130812-65130658) |
|
426-659, gnl|galGal2|chrW (3924700-3924547) |
|
426-659, gnl|hg17|chr15 (46495017-46495170) |
|
426-659, gnl|Hg17|chr15 (46495257-46495024) |
|
426-659, gnl|loxAfr1|scaffold_11001 (2672-2822) |
|
426-659, gnl|mm7|chr2 (125047115-125047268) |
|
426-659, gnl|Mm7|chr2 (125047355-125047122) |
|
426-659, gnl|monDom2|scaffold_12 (20551796-20551647) |
|
426-659, gnl|oryCun1|scaffold_214549 (143089-143246) |
|
426-659, gnl|panTro1|chr16 (46470111-46470264) |
|
426-659, gnl|rheMac2|chr7 (26739926-26740079) |
|
426-659, gnl|rn3|chr3 (112518954-112519107) |
|
426-659, gnl|tetNig1|chr5 (10068734-10068886) |
|
426-659, gnl|xenTro1|scaffold_27 (2739744-2739893) |
| |
|
832-2136, gnl|bosTau2|chr10 (42652540-42653842) |
|
832-2136, gnl|Hg17|chr15 (46490870-46489562) |
|
832-2136, gnl|Mm7|chr2 (125042830-125041529) |
|
ski (1.90756) |
|
fat (1.17942) |
|
rec (0.865351) |
|
aor (0.781097) |
|
sto (0.719295) |
|
gul (0.710353) |
|
mcp (0.682594) |
|
eru (0.60024) |
|
liv (0.585137) |
|
mga (0.480615) |
|
bfe (0.449573) |
|
csk (0.422238) |
|
pla (0.401016) |
|
ova (0.387397) |
|
ret (0.3862) |
|
sug (0.381874) |
|
nep (0.36785) |
|
tbr (0.308356) |
|
cte (0.29274) |
|
ldo (0.291008) |
|
spl (0.286369) |
|
che (0.272628) |
|
bla (0.248694) |
|
eep (0.245128) |
|
pgl (0.236967) |
|
mgp (0.230681) |
|
ece (0.229305) |
|
jca (0.22792) |
|
hea (0.204499) |
|
sag (0.182715) |
|
sin (0.174948) |
|
eye (0.170503) |
|
nje (0.16592) |
|
isp (0.150376) |
|
lin (0.145603) |
|
lnt (0.142308) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
kid (0.129735) |
|
tra (0.123092) |
|
cly (0.120642) |
|
med (0.116252) |
|
spc (0.113366) |
|
ski (1.90756) |
|
fat (1.17942) |
|
rec (0.865351) |
|
aor (0.781097) |
|
sto (0.719295) |
|
gul (0.710353) |
|
mcp (0.682594) |
|
eru (0.60024) |
|
liv (0.585137) |
|
mga (0.480615) |
|
bfe (0.449573) |
|
csk (0.422238) |
|
pla (0.401016) |
|
ova (0.387397) |
|
ret (0.3862) |
|
sug (0.381874) |
|
nep (0.36785) |
|
tbr (0.308356) |
|
cte (0.29274) |
|
ldo (0.291008) |
|
spl (0.286369) |
|
che (0.272628) |
|
bla (0.248694) |
|
eep (0.245128) |
|
pgl (0.236967) |
|
mgp (0.230681) |
|
ece (0.229305) |
|
jca (0.22792) |
|
hea (0.204499) |
|
sag (0.182715) |
|
sin (0.174948) |
|
eye (0.170503) |
|
nje (0.16592) |
|
isp (0.150376) |
|
lin (0.145603) |
|
lnt (0.142308) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
kid (0.129735) |
|
tra (0.123092) |
|
cly (0.120642) |
|
med (0.116252) |
|
spc (0.113366) |
