Ss1.1-rpgl25_m6.5.5
|
TCATCTCCGGTGCTTCAAAAGGCTCTTCTTGTAATCTTCCGAAGCCCTTGGCGATAGTAA
TTTGAGAAATATCCATTTTATTAATGATTTGCAAACACAGAGAAATACCGGTGGGCAATC
TGTCGGCCTATTTCAGAGCCCTTGATTTTTACATTGTGGAAGCGTAAAGTGCTTTAACCT
TTAACCTCTAACCTCCGGCCAGGGGCATCGGAGAGAAACGCCTCCGTCTCTATATAAGGA
ATTTCCGGGCTTTTTGCGGCCTTTTTCCTCTTAGCGTTAGGCTCCCTCGCCTGCGCTCCT
TTTTTCCTCCGCTGCGGCCCAGTTCCCAGATCGACAATCGCCATGGGTTTTGGAGACTTG
AAAAGCCCCGCCGGCCTCCAGGTGCTCAACGACTACCTGGCAGACAAGAGCTACATCGAG
GGGTATGTGCCATCACAAGCAGATGTGGCAGTTTTTGAAGCAGTCTCCGGCCCACCACCT
GCTGACTTGTGTCATGCCCTACGTTGGTATAATCACATCAAATCTTATGAAAAAGAAAAG
GCCAGCCTGCCAGGAGTGAAGAAAGCTTTGGGCAAGTATGGCCCTGCCAATGTGGAAGAC
ACCACAGAAAGTGGAGCTACAGACAGTAAAGATGATGATGACATTGACCTCTTTGGATCC
GATGATGAGGAGGAAAGTGAAGAAGCTAAGAGGCTAAGAGAAGAACGCCTTGCACAGTAT
GAGTCAAAGAAAGCCAAAAAACCAGCACTTGTTGCCAAGTCTTCCATCTTATTAGACGTG
AAACCTTGGGATGATGAGACAGATATGGCAAAACTAGAGGAGTGCGTCAGAAGCATTCAA
GCAGATGGCTTGGTCTGGGGCTCTTCCAAACTAGTTCCGGTGGGGTATGGAATTAAAAAA
CTTCAGATACAGTGTGTAGTTGAAGACGATAAAGTTGGAACAGATATGCTGGAGGAGCAG
ATCACTGCTTTTGAGGACTATGTGCAGTCTATGGATGTGGCCGCGTTCAACAAAATCTAA
AATCCATCGTGGACTGTTGCCCTTCAATAAAAGTTTGAAAGACAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCATCTCCGGTGCTTCAAAAGGCTCTTCTTGTAATCTTCCGAAGCCCTTGGCGATAGTAA
TTTGAGAAATATCCATTTTATTAATGATTTGCAAACACAGAGAAATACCGGTGGGCAATC
TGTCGGCCTATTTCAGAGCCCTTGATTTTTACATTGTGGAAGCGTAAAGTGCTTTAACCT
TTAACCTCTAACCTCCGGCCAGGGGCATCGGAGAGAAACGCCTCCGTCTCTATATAAGGA
ATTTCCGGGCTTTTTGCGGCCTTTTTCCTCTTAGCGTTAGGCTCCCTCGCCTGCGCTCCT
TTTTTCCTCCGCTGCGGCCCAGTTCCCAGATCGACAATCGCCATGGGTTTTGGAGACTTG
AAAAGCCCCGCCGGCCTCCAGGTGCTCAACGACTACCTGGCAGACAAGAGCTACATCGAG
GGGTATGTGCCATCACAAGCAGATGTGGCAGTTTTTGAAGCAGTCTCCGGCCCACCACCT
GCTGACTTGTGTCATGCCCTACGTTGGTATAATCACATCAAATCTTATGAAAAAGAAAAG
GCCAGCCTGCCAGGAGTGAAGAAAGCTTTGGGCAAGTATGGCCCTGCCAATGTGGAAGAC
ACCACAGAAAGTGGAGCTACAGACAGTAAAGATGATGATGACATTGACCTCTTTGGATCC
GATGATGAGGAGGAAAGTGAAGAAGCTAAGAGGCTAAGAGAAGAACGCCTTGCACAGTAT
GAGTCAAAGAAAGCCAAAAAACCAGCACTTGTTGCCAAGTCTTCCATCTTATTAGACGTG
AAACCTTGGGATGATGAGACAGATATGGCAAAACTAGAGGAGTGCGTCAGAAGCATTCAA
GCAGATGGCTTGGTCTGGGGCTCTTCCAAACTAGTTCCGGTGGGGTATGGAATTAAAAAA
CTTCAGATACAGTGTGTAGTTGAAGACGATAAAGTTGGAACAGATATGCTGGAGGAGCAG
ATCACTGCTTTTGAGGACTATGTGCAGTCTATGGATGTGGCCGCGTTCAACAAAATCTAA
AATCCATCGTGGACTGTTGCCCTTCAATAAAAGTTTGAAAGACAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
cmu (6.52377) |
|
sto (6.29383) |
|
bla (3.97911) |
|
csk (3.80014) |
|
ldo (3.39509) |
|
ste (3.38021) |
|
mgp (3.22953) |
|
pan (2.83152) |
|
mga (2.56328) |
|
ski (2.4945) |
|
cst (2.38062) |
|
cut (2.20901) |
|
sme (2.13806) |
|
amn (2.08855) |
|
ssp (2.0328) |
|
cki (1.98282) |
|
aor (1.95274) |
|
ova (1.93698) |
|
csp (1.93424) |
|
rec (1.90377) |
|
mcp (1.87713) |
|
cje (1.81758) |
|
eje (1.77901) |
|
pgl (1.77725) |
|
nep (1.65532) |
|
isp (1.65414) |
|
bfe (1.64843) |
|
thg (1.64828) |
|
nco (1.61734) |
|
lnt (1.56539) |
|
pro (1.5361) |
|
lyg (1.46413) |
|
med (1.39502) |
|
ese (1.39152) |
|
tbr (1.3876) |
|
duo (1.38241) |
|
cag (1.36075) |
|
lun (1.3544) |
|
eep (1.3482) |
|
nje (1.32736) |
|
cly (1.32706) |
|
gul (1.24312) |
|
sin (1.22463) |
|
nmm (1.19522) |
|
nlu (1.15009) |
|
ece (1.14653) |
|
tra (1.10783) |
|
fty (1.05504) |
|
ton (1.053) |
|
fat (1.03199) |
|
spc (1.02029) |
|
sug (1.01833) |
|
fli (1.0144) |
|
col (0.975039) |
|
eru (0.960384) |
|
sag (0.913576) |
|
mgm (0.901713) |
|
lin (0.873617) |
|
spl (0.859107) |
|
nca (0.821243) |
|
che (0.817884) |
|
ecc (0.805246) |
|
ute (0.796707) |
|
fcc (0.791139) |
|
cbe (0.717703) |
|
ill (0.702371) |
|
eye (0.682012) |
|
kid (0.648677) |
|
mas (0.630915) |
|
fco (0.628832) |
|
ebs (0.591506) |
|
hyp (0.571347) |
|
pty (0.570858) |
|
jca (0.569801) |
|
fce (0.543183) |
|
cov (0.528611) |
|
fhi (0.508733) |
|
nbm (0.496623) |
|
liv (0.438853) |
|
hea (0.408998) |
|
ret (0.3862) |
|
elu (0.385356) |
|
fbs (0.350693) |
|
vin (0.332557) |
|
cli (0.305623) |
|
cga (0.279096) |
|
jej (0.197844) |
|
eli (0.151814) |
|
hlv (0.139256) |
|
clu (0.119646) |
|
cty (0.10408) |
|
cmu (6.52377) |
|
sto (6.29383) |
|
bla (3.97911) |
|
csk (3.80014) |
|
ldo (3.39509) |
|
ste (3.38021) |
|
mgp (3.22953) |
|
pan (2.83152) |
|
mga (2.56328) |
|
ski (2.4945) |
|
cst (2.38062) |
|
cut (2.20901) |
|
sme (2.13806) |
|
amn (2.08855) |
|
ssp (2.0328) |
|
cki (1.98282) |
|
aor (1.95274) |
|
ova (1.93698) |
|
csp (1.93424) |
|
rec (1.90377) |
|
mcp (1.87713) |
|
cje (1.81758) |
|
eje (1.77901) |
|
pgl (1.77725) |
|
nep (1.65532) |
|
isp (1.65414) |
|
bfe (1.64843) |
|
thg (1.64828) |
|
nco (1.61734) |
|
lnt (1.56539) |
|
pro (1.5361) |
|
lyg (1.46413) |
|
med (1.39502) |
|
ese (1.39152) |
|
tbr (1.3876) |
|
duo (1.38241) |
|
cag (1.36075) |
|
lun (1.3544) |
|
eep (1.3482) |
|
nje (1.32736) |
|
cly (1.32706) |
|
gul (1.24312) |
|
sin (1.22463) |
|
nmm (1.19522) |
|
nlu (1.15009) |
|
ece (1.14653) |
|
tra (1.10783) |
|
fty (1.05504) |
|
ton (1.053) |
|
fat (1.03199) |
|
spc (1.02029) |
|
sug (1.01833) |
|
fli (1.0144) |
|
col (0.975039) |
|
eru (0.960384) |
|
sag (0.913576) |
|
mgm (0.901713) |
|
lin (0.873617) |
|
spl (0.859107) |
|
nca (0.821243) |
|
che (0.817884) |
|
ecc (0.805246) |
|
ute (0.796707) |
|
fcc (0.791139) |
|
cbe (0.717703) |
|
ill (0.702371) |
|
eye (0.682012) |
|
kid (0.648677) |
|
mas (0.630915) |
|
fco (0.628832) |
|
ebs (0.591506) |
|
hyp (0.571347) |
|
pty (0.570858) |
|
jca (0.569801) |
|
fce (0.543183) |
|
cov (0.528611) |
|
fhi (0.508733) |
|
nbm (0.496623) |
|
liv (0.438853) |
|
hea (0.408998) |
|
ret (0.3862) |
|
elu (0.385356) |
|
fbs (0.350693) |
|
vin (0.332557) |
|
cli (0.305623) |
|
cga (0.279096) |
|
jej (0.197844) |
|
eli (0.151814) |
|
hlv (0.139256) |
|
clu (0.119646) |
|
cty (0.10408) |
