Non-Coding RNA Search

Ss1.1-rpgl26_a13.5

Sequence:


               
               ACGGCACACACATCAGAGAGCTCAGAAGAATTCTTGGAAGAACCTGAACAGAGTGTGATT
GACTTTGAGGATGAAAGTAGTGATAAAGATGTTCGGCCAGCACCAGAAGCCCAGCCACAG
CTGGAAAAGCAAGATGGTGAAAAGGAATCTGAATTAGAGCCTATGAATGGTGAGATAATG
GATGACACTCTTAAGACTTCACTTATAACAGAAGAGGAGGACTCCACTAGTGAAGTTTTA
GATGAAGAATTAAAATTGCAGTCTTTTAATTCCAGTGAAGACTCTACAAATCTTGTTCCA
CTGGTGGTAGAATCTTCAAAACCCCCTGAGGCTGTTGCCCAGGATAAGACCTCACATATA
ACTGACTCAGAAATGTTGCTAGATGAAGGCCCATCTGATGACAAGGGGCACAGTGAGGAG
AAGCTGCCTCTAGTCTCACGGAAGAAAGCCCATTTTGGGAGTTCAGACAATGTTACTACC
ATCCCAAACGAAGAACGGTCCGACAGTGGTTTTCCAAACTCTGTGATAGCTGAATTCTCT
GAAGAGTCCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGCACACACATCAGAGAGCTCAGAAGAATTCTTGGAAGAACCTGAACAGAGTGTGATT
GACTTTGAGGATGAAAGTAGTGATAAAGATGTTCGGCCAGCACCAGAAGCCCAGCCACAG
CTGGAAAAGCAAGATGGTGAAAAGGAATCTGAATTAGAGCCTATGAATGGTGAGATAATG
GATGACACTCTTAAGACTTCACTTATAACAGAAGAGGAGGACTCCACTAGTGAAGTTTTA
GATGAAGAATTAAAATTGCAGTCTTTTAATTCCAGTGAAGACTCTACAAATCTTGTTCCA
CTGGTGGTAGAATCTTCAAAACCCCCTGAGGCTGTTGCCCAGGATAAGACCTCACATATA
ACTGACTCAGAAATGTTGCTAGATGAAGGCCCATCTGATGACAAGGGGCACAGTGAGGAG
AAGCTGCCTCTAGTCTCACGGAAGAAAGCCCATTTTGGGAGTTCAGACAATGTTACTACC
ATCCCAAACGAAGAACGGTCCGACAGTGGTTTTCCAAACTCTGTGATAGCTGAATTCTCT
GAAGAGTCCATC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|10434686|dbj|BAB14344.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|10434686|dbj|BAB14344.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               143-291, + strand, RNAz p=0.968919
               

               
               231-348, - strand, RNAz p=0.937161

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               143-291, + strand, RNAz p=0.968919
               

               
               231-348, - strand, RNAz p=0.937161

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               143-348, gnl|bosTau2|chr20 (3428349-3428144)
               

               
               143-348, gnl|canFam2|chr2 (60195588-60195815)
               

               
               143-348, gnl|echTel1|scaffold_305225 (52322-52548)
               

               
               143-348, gnl|galGal2|chrZ (9926128-9926343)
               

               
               143-348, gnl|hg17|chr5 (74114494-74114721)
               

               
               143-348, gnl|Hg17|chr5 (74114717-74114512)
               

               
               143-348, gnl|loxAfr1|scaffold_26518 (13789-13564)
               

               
               143-348, gnl|mm7|chr13 (94193307-94193092)
               

               
               143-348, gnl|Mm7|chr13 (94193094-94193296)
               

               
               143-348, gnl|monDom2|scaffold_60 (8846935-8847163)
               

               
               143-348, gnl|oryCun1|scaffold_104072 (4177-3950)
               

               
               143-348, gnl|panTro1|chr4 (41337968-41337741)
               

               
               143-348, gnl|rheMac2|chr6 (70970405-70970631)
               

               
               143-348, gnl|rn3|chr2 (27520210-27519992)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               143-348, gnl|bosTau2|chr20 (3428349-3428144)
               

               
               143-348, gnl|canFam2|chr2 (60195588-60195815)
               

               
               143-348, gnl|echTel1|scaffold_305225 (52322-52548)
               

               
               143-348, gnl|galGal2|chrZ (9926128-9926343)
               

               
               143-348, gnl|hg17|chr5 (74114494-74114721)
               

               
               143-348, gnl|Hg17|chr5 (74114717-74114512)
               

               
               143-348, gnl|loxAfr1|scaffold_26518 (13789-13564)
               

               
               143-348, gnl|mm7|chr13 (94193307-94193092)
               

               
               143-348, gnl|Mm7|chr13 (94193094-94193296)
               

               
               143-348, gnl|monDom2|scaffold_60 (8846935-8847163)
               

               
               143-348, gnl|oryCun1|scaffold_104072 (4177-3950)
               

               
               143-348, gnl|panTro1|chr4 (41337968-41337741)
               

               
               143-348, gnl|rheMac2|chr6 (70970405-70970631)
               

               
               143-348, gnl|rn3|chr2 (27520210-27519992)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fhi (0.169578)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               pgl (0.118483)

	143-291, + strand, RNAz p=0.968919
	231-348, - strand, RNAz p=0.937161

	143-348, gnl\|bosTau2\|chr20 (3428349-3428144)
	143-348, gnl\|canFam2\|chr2 (60195588-60195815)
	143-348, gnl\|echTel1\|scaffold_305225 (52322-52548)
	143-348, gnl\|galGal2\|chrZ (9926128-9926343)
	143-348, gnl\|hg17\|chr5 (74114494-74114721)
	143-348, gnl\|Hg17\|chr5 (74114717-74114512)
	143-348, gnl\|loxAfr1\|scaffold_26518 (13789-13564)
	143-348, gnl\|mm7\|chr13 (94193307-94193092)
	143-348, gnl\|Mm7\|chr13 (94193094-94193296)
	143-348, gnl\|monDom2\|scaffold_60 (8846935-8847163)
	143-348, gnl\|oryCun1\|scaffold_104072 (4177-3950)
	143-348, gnl\|panTro1\|chr4 (41337968-41337741)
	143-348, gnl\|rheMac2\|chr6 (70970405-70970631)
	143-348, gnl\|rn3\|chr2 (27520210-27519992)