Non-Coding RNA Search

Ss1.1-rpgl26_o8.5

Sequence:


               
               CTATGACCTGTCTTCTGTAGCCTGTGGGGAGTTTCCCAAGGCAGATCCTTTGCCATGGCA
GCATGGTCCTGGCCTGTTGGCCCCTTGGCCTCATACCCCTTCCCCCATTCTGTAAATACT
TATCATCGTATACTCCAACAGGGTCAGAGGGACAGCCTTGATCAACTGAAAGGCCTCAGA
GATAACATTTCTGTCTCCCTGGGTACCAGCAGCTCTGCTGCCAATGTGCACTGGGGTGAA
CTGGAGAGCCATGGAAGTTGTGAGATAATTTTGTGTGTATGCATGTGAACAAGTGTGTGA
GTGTGTATGTATGAGCGTGTCTGCCTCATTCAGCCTCTGGGATCAAATCAGCTCCTTCTC
TCTAAGTGCAGTGCCCTGGAGAGTGGTGGCCGCCCAACGCCTTTCCTCTGCTAGCTTCCA
TGTCTTGTTTTTGCTTTCCCCTCACTCCTTCCCTGCCTCCCTTCTTTCCTCTCTCCCTTT
CTTTCCTTCCCTCCTTCTTTATTTGAGGGGGGAAGAGTGCTGTACAAAGTCAAACAAACA
AGTTTACAGTTGTAAGTGCAATGACCCAAGTCCTCCACATGACCTTGTGAATTGTGTGCC
GTCCTCCTGTGCTCTGTGAGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATGACCTGTCTTCTGTAGCCTGTGGGGAGTTTCCCAAGGCAGATCCTTTGCCATGGCA
GCATGGTCCTGGCCTGTTGGCCCCTTGGCCTCATACCCCTTCCCCCATTCTGTAAATACT
TATCATCGTATACTCCAACAGGGTCAGAGGGACAGCCTTGATCAACTGAAAGGCCTCAGA
GATAACATTTCTGTCTCCCTGGGTACCAGCAGCTCTGCTGCCAATGTGCACTGGGGTGAA
CTGGAGAGCCATGGAAGTTGTGAGATAATTTTGTGTGTATGCATGTGAACAAGTGTGTGA
GTGTGTATGTATGAGCGTGTCTGCCTCATTCAGCCTCTGGGATCAAATCAGCTCCTTCTC
TCTAAGTGCAGTGCCCTGGAGAGTGGTGGCCGCCCAACGCCTTTCCTCTGCTAGCTTCCA
TGTCTTGTTTTTGCTTTCCCCTCACTCCTTCCCTGCCTCCCTTCTTTCCTCTCTCCCTTT
CTTTCCTTCCCTCCTTCTTTATTTGAGGGGGGAAGAGTGCTGTACAAAGTCAAACAAACA
AGTTTACAGTTGTAAGTGCAATGACCCAAGTCCTCCACATGACCTTGTGAATTGTGTGCC
GTCCTCCTGTGCTCTGTGAGAACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               421-578, - strand, RNAz p=0.996621

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               421-578, - strand, RNAz p=0.996621

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               501-578, hd20f08.y1 Human Retina cDNA (Un-normalized, unamplified) 
(gb|BQ638281.1|), blast E-value=1e-32, identity=98.72% 
               

               
               501-578, im26f07.x1 Human insulinoma Homo sapiens cDNA clone IMAGE 
(gb|BU070626.1|), blast E-value=1e-32, identity=98.72% 
               

               
               501-578, io33b09.x1 Human insulinoma Homo sapiens cDNA clone IMAGE 
(gb|BU787414.1|), blast E-value=1e-32, identity=98.72% 
               

               
               501-578, io33b09.y1 Human insulinoma Homo sapiens cDNA clone IMAGE 
(gb|BU787692.1|), blast E-value=1e-32, identity=98.72% 
               

               
               501-578, UI-H-EZ0-bal-m-06-0-UI.s1 NCI_CGAP_Ch1 Homo sapiens cDNA clone 
(gb|CA412045.1|), blast E-value=1e-32, identity=98.72% 
               

               
               501-578, ILLUMIGEN_MCQ_26181 Katze_MMBR Macaca mulatta cDNA clone IBIUW 
(gb|CN646426.1|), blast E-value=1e-32, identity=98.72%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               501-578, hd20f08.y1 Human Retina cDNA (Un-normalized, unamplified) 
(gb|BQ638281.1|), blast E-value=1e-32, identity=98.72% 
               

               
               501-578, im26f07.x1 Human insulinoma Homo sapiens cDNA clone IMAGE 
(gb|BU070626.1|), blast E-value=1e-32, identity=98.72% 
               

               
               501-578, io33b09.x1 Human insulinoma Homo sapiens cDNA clone IMAGE 
(gb|BU787414.1|), blast E-value=1e-32, identity=98.72% 
               

               
               501-578, io33b09.y1 Human insulinoma Homo sapiens cDNA clone IMAGE 
(gb|BU787692.1|), blast E-value=1e-32, identity=98.72% 
               

               
               501-578, UI-H-EZ0-bal-m-06-0-UI.s1 NCI_CGAP_Ch1 Homo sapiens cDNA clone 
(gb|CA412045.1|), blast E-value=1e-32, identity=98.72% 
               

               
               501-578, ILLUMIGEN_MCQ_26181 Katze_MMBR Macaca mulatta cDNA clone IBIUW 
(gb|CN646426.1|), blast E-value=1e-32, identity=98.72%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-624, gnl|bosTau2|chr22 (38051686-38052310)
               

               
               1-624, gnl|Hg17|chr3 (49683279-49683901)
               

               
               1-624, gnl|Mm7|chr9 (107826304-107825683)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr22 (38051686-38052310)
               

               
               1-624, gnl|Hg17|chr3 (49683279-49683901)
               

               
               1-624, gnl|Mm7|chr9 (107826304-107825683)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pgl (0.236967)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)

	501-578, hd20f08.y1 Human Retina cDNA (Un-normalized, unamplified) (gb\|BQ638281.1\|), blast E-value=1e-32, identity=98.72%
	501-578, im26f07.x1 Human insulinoma Homo sapiens cDNA clone IMAGE (gb\|BU070626.1\|), blast E-value=1e-32, identity=98.72%
	501-578, io33b09.x1 Human insulinoma Homo sapiens cDNA clone IMAGE (gb\|BU787414.1\|), blast E-value=1e-32, identity=98.72%
	501-578, io33b09.y1 Human insulinoma Homo sapiens cDNA clone IMAGE (gb\|BU787692.1\|), blast E-value=1e-32, identity=98.72%
	501-578, UI-H-EZ0-bal-m-06-0-UI.s1 NCI_CGAP_Ch1 Homo sapiens cDNA clone (gb\|CA412045.1\|), blast E-value=1e-32, identity=98.72%
	501-578, ILLUMIGEN_MCQ_26181 Katze_MMBR Macaca mulatta cDNA clone IBIUW (gb\|CN646426.1\|), blast E-value=1e-32, identity=98.72%

	1-624, gnl\|bosTau2\|chr22 (38051686-38052310)
	1-624, gnl\|Hg17\|chr3 (49683279-49683901)
	1-624, gnl\|Mm7\|chr9 (107826304-107825683)