Non-Coding RNA Search

Ss1.1-rpgl27_b14.5

Sequence:


               
               GCGCGCGCGCGCCGAGGGGCAGCCGGAGTTCTGAGTGGGCCAAAGCGTGGTTGCGGCTGC
TCGCCCGGGACGGCCGCACCATGGCTGAGGAGGAGCTCGAGGCGCTGAGGAAGCAGAGGC
TGGCCGAGCTGCAGGCGAAGCATGGGGATCCTGGTGATGCAGCACAACAGGAAGCAAAGC
ACAGGGAAGCAGAAATGAGAAACAGTATCTTAGCCCAAGTTCTGGATCAGTCAGCCCGGG
CCCGGTTAAGTAACTTAGCACTTGTAAAGCCTGAGAAAACTAAAGCAGTAGAGAACTACC
TTATACAGATGGCACGATATGGACAGCTAAGTGGAAAGGTATCAGAACAAGGTTTAATAG
AAATCCTCGAAAAAGTAAGCCAACAAACAGAAAAGAAAACAACAGTTAAATTCAACAGAA
GAAAAGTAATGGACTCTGATGAAGATGACGATTATTGAATTTAAGATGTTTAGAGACTGG
AACTTAATGGAACAATTCTAGGACAGATAATACCTGGCAGCAGTTAAGATCTGACGGGAA
GTTTACTTTGTTTATTGTCCATATACCTTTTAAAAATAAACTTGTTATGCAAAATAAAAC
AATTTGGGCAAAGTTGTTCTAGTACCATAGCTAAATAAAGAAGATCTGCATTTAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCGCGCGCGCCGAGGGGCAGCCGGAGTTCTGAGTGGGCCAAAGCGTGGTTGCGGCTGC
TCGCCCGGGACGGCCGCACCATGGCTGAGGAGGAGCTCGAGGCGCTGAGGAAGCAGAGGC
TGGCCGAGCTGCAGGCGAAGCATGGGGATCCTGGTGATGCAGCACAACAGGAAGCAAAGC
ACAGGGAAGCAGAAATGAGAAACAGTATCTTAGCCCAAGTTCTGGATCAGTCAGCCCGGG
CCCGGTTAAGTAACTTAGCACTTGTAAAGCCTGAGAAAACTAAAGCAGTAGAGAACTACC
TTATACAGATGGCACGATATGGACAGCTAAGTGGAAAGGTATCAGAACAAGGTTTAATAG
AAATCCTCGAAAAAGTAAGCCAACAAACAGAAAAGAAAACAACAGTTAAATTCAACAGAA
GAAAAGTAATGGACTCTGATGAAGATGACGATTATTGAATTTAAGATGTTTAGAGACTGG
AACTTAATGGAACAATTCTAGGACAGATAATACCTGGCAGCAGTTAAGATCTGACGGGAA
GTTTACTTTGTTTATTGTCCATATACCTTTTAAAAATAAACTTGTTATGCAAAATAAAAC
AATTTGGGCAAAGTTGTTCTAGTACCATAGCTAAATAAAGAAGATCTGCATTTAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q564F6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q564F6_MOUSE

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               14-602, gnl|bosTau2|chr16 (23338148-23337548)
               

               
               14-602, gnl|Mm7|chr1 (188810149-188809631)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-602, gnl|bosTau2|chr16 (23338148-23337548)
               

               
               14-602, gnl|Mm7|chr1 (188810149-188809631)

Expressed library(ies): 45 entry(ies)

More info

Expressed library(ies): 45 entry(ies)

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               cte (2.04918)
               

               
               bfe (1.19886)
               

               
               cbe (1.19617)
               

               
               csk (1.12597)
               

               
               sto (1.07894)
               

               
               hea (1.02249)
               

               
               cmu (0.931966)
               

               
               isp (0.902256)
               

               
               cut (0.849618)
               

               
               rec (0.519211)
               

               
               ova (0.516529)
               

               
               cje (0.495704)
               

               
               pgl (0.473934)
               

               
               spc (0.453463)
               

               
               tes (0.415628)
               

               
               ste (0.405625)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               fco (0.314416)
               

               
               lnt (0.284616)
               

               
               cst (0.280073)
               

               
               nca (0.273748)
               

               
               che (0.272628)
               

               
               ssp (0.271039)
               

               
               kid (0.259471)
               

               
               nms (0.213858)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (2.04918)
               

               
               bfe (1.19886)
               

               
               cbe (1.19617)
               

               
               csk (1.12597)
               

               
               sto (1.07894)
               

               
               hea (1.02249)
               

               
               cmu (0.931966)
               

               
               isp (0.902256)
               

               
               cut (0.849618)
               

               
               rec (0.519211)
               

               
               ova (0.516529)
               

               
               cje (0.495704)
               

               
               pgl (0.473934)
               

               
               spc (0.453463)
               

               
               tes (0.415628)
               

               
               ste (0.405625)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               fco (0.314416)
               

               
               lnt (0.284616)
               

               
               cst (0.280073)
               

               
               nca (0.273748)
               

               
               che (0.272628)
               

               
               ssp (0.271039)
               

               
               kid (0.259471)
               

               
               nms (0.213858)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	14-602, gnl\|bosTau2\|chr16 (23338148-23337548)
	14-602, gnl\|Mm7\|chr1 (188810149-188809631)

	cte (2.04918)
	bfe (1.19886)
	cbe (1.19617)
	csk (1.12597)
	sto (1.07894)
	hea (1.02249)
	cmu (0.931966)
	isp (0.902256)
	cut (0.849618)
	rec (0.519211)
	ova (0.516529)
	cje (0.495704)
	pgl (0.473934)
	spc (0.453463)
	tes (0.415628)
	ste (0.405625)
	elu (0.385356)
	sug (0.381874)
	thg (0.380373)
	sag (0.36543)
	fco (0.314416)
	lnt (0.284616)
	cst (0.280073)
	nca (0.273748)
	che (0.272628)
	ssp (0.271039)
	kid (0.259471)
	nms (0.213858)
	nbm (0.198649)
	jej (0.197844)
	aor (0.195274)
	nep (0.183925)
	fty (0.17584)
	cki (0.165235)
	mga (0.160205)
	ski (0.146735)
	lin (0.145603)
	hyp (0.142837)
	pty (0.142714)
	lyg (0.133103)
	bla (0.124347)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)