Non-Coding RNA Search

Ss1.1-rpgl27_f18.5

Sequence:


               
               TCTGGTTACCTCCGAGGCTGGGGGAGGCCTGGCTGCCCATTGCCTCACTCCCTGCCCCTC
CTTTTCTGTCCATAAAGTGGCGTGAATTGACGTTCTCTTTGGTGGTCAGCCTGGATGGGT
GACAGGCTGTATGGCCTTGTGAACTTGAACTCATTGTACGCTAGGTGACAAGTCTCCCAC
TCCAGGCCCTCACTAACCGACCACCTGTCCTGGGACCAGCTGTGAGGGGAGTGTGGCAGG
GAGGAAGAAGAGAGTGAGAGTGGAACAGTTTTGTATTCTACTCCCTACAAGCCATTTTGA
GCTTCTGCCCTCACTGTGACCAGGGCACCAAGCTCAGCACATGAGTCTCCCCCTGATCTT
GTGGGGAGAGGGATGCTATTTATTCAGTCTGGGACAGGAGGGAGAGGAGGGAAAGTATTT
CTGACCCCGATGCAAACAGCTTGGGTGGCTCTCGTAGCAGGATCACAGGGGACATAGGGG
AGCCGTGCTAACCTGCCCAGCCCCCACCTGGCTGCCCTCACCCACCTGCTGCTGCTGCCG
CTTCCTGCCTGTCATTTGAATAAACAGTGTTTCTAAGAGCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGGTTACCTCCGAGGCTGGGGGAGGCCTGGCTGCCCATTGCCTCACTCCCTGCCCCTC
CTTTTCTGTCCATAAAGTGGCGTGAATTGACGTTCTCTTTGGTGGTCAGCCTGGATGGGT
GACAGGCTGTATGGCCTTGTGAACTTGAACTCATTGTACGCTAGGTGACAAGTCTCCCAC
TCCAGGCCCTCACTAACCGACCACCTGTCCTGGGACCAGCTGTGAGGGGAGTGTGGCAGG
GAGGAAGAAGAGAGTGAGAGTGGAACAGTTTTGTATTCTACTCCCTACAAGCCATTTTGA
GCTTCTGCCCTCACTGTGACCAGGGCACCAAGCTCAGCACATGAGTCTCCCCCTGATCTT
GTGGGGAGAGGGATGCTATTTATTCAGTCTGGGACAGGAGGGAGAGGAGGGAAAGTATTT
CTGACCCCGATGCAAACAGCTTGGGTGGCTCTCGTAGCAGGATCACAGGGGACATAGGGG
AGCCGTGCTAACCTGCCCAGCCCCCACCTGGCTGCCCTCACCCACCTGCTGCTGCTGCCG
CTTCCTGCCTGTCATTTGAATAAACAGTGTTTCTAAGAGCAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               154-265, - strand, RNAz p=0.617047
               

               
               305-452, + strand, RNAz p=0.775295

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-265, - strand, RNAz p=0.617047
               

               
               305-452, + strand, RNAz p=0.775295

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_003170, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003170, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-581, gnl|bosTau2|chr19 (13670397-13670973)
               

               
               1-581, gnl|Hg17|chr17 (24052789-24053379)
               

               
               1-581, gnl|Mm7|chr11 (78289139-78288597)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-581, gnl|bosTau2|chr19 (13670397-13670973)
               

               
               1-581, gnl|Hg17|chr17 (24052789-24053379)
               

               
               1-581, gnl|Mm7|chr11 (78289139-78288597)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               cut (0.509771)
               

               
               pgl (0.236967)
               

               
               ton (0.1755)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.509771)
               

               
               pgl (0.236967)
               

               
               ton (0.1755)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               ecc (0.115035)

	154-265, - strand, RNAz p=0.617047
	305-452, + strand, RNAz p=0.775295

	1-581, gnl\|bosTau2\|chr19 (13670397-13670973)
	1-581, gnl\|Hg17\|chr17 (24052789-24053379)
	1-581, gnl\|Mm7\|chr11 (78289139-78288597)

	cut (0.509771)
	pgl (0.236967)
	ton (0.1755)
	cag (0.151194)
	csk (0.140746)
	ecc (0.115035)