Ss1.1-rpgl27_m12.5
|
AATTATTACGCAAAGTCAATAGTCTACCTTTTGAAACAAATTGGCAAAATTGATTGACTT
TTGGCCCAAATTTTCAGTGTGAATTAAAAAAATCAAGGAAAAAGATATAAGCTCCCATTG
TTACACAGCCTCGGAGAGAATTATGCTAGATTGTTGAGACAGGAAGTTTACATATGTTTA
TGAAGGGTCAGTTTAGGTTGAGCAATGAGGTATTTGTATTAGGTCTTGGAAAATGGAGAA
TTAGTTGGATTAAATCATGTGAGCTCACACAGTGAACTTGCAGGTGCACAAAGTAAGAGG
GCACATCTGTATAGTGCAGTCTGGATTTCTGTTTGAGTTTACAGGTACCTCTTGGACTCC
TGAATTGATCCAGTTGTCATCCACCACAGACGTCTAACATCAGATGGAATCCCAAGATTG
GCAACAGAGAACATTCTGCTGGAAAGACCTGGGCAGAAGTGAAGGAACACCTGCAGAGAT
GAAGTGCTAGATGGGAACCACGCTACGTTTTCATCAAAAGAATGCGTGTCACTTGGGACT
GAAAGTTCTTTGTTGTTTCAGATTGTAGAGTGCTATCAAATTGGTCTGTGGAAAATTGCA
TTGTTCTTATTTCTTTGTGTAATCTTAAACTTAAGTAATTGGGGATATATATAATCTTAA
GTATTTTAGAGAGGGTGGGACTATTAAGTAATCTTAAGTGGGTGGGATTAGTTCAAAAGC
ATGATATTATGTATTAGATATCTCTATAAGTGGACACGTGTACTTACTTGTGATCCTTTA
CCCTATGATTGCTACCCCTAGAGATTTCAAATAAACTTGGAGGGAACTGCAGGGAGATCA
ATCTTTTTAGGGCTATCAGACGTGGATAAAAACCTAGTGGGAGAAAGTTCAGTTGATTGG
ATAAGTAGTTTAATAGAAGTTCTTTGCCCTGGATATTAACTCCAGGAATTAAGATTGTAA
GCAAAGCCTTTAGCGAGTTAGGATGGATAGATGCCCTTTGAGCAATTGTTGCTGGAGTGA
GGTTGATGATGGTAAATGGTAAAGATTCATGGAAGTTCTAGGAAAGTGATAAGAACTGTT
GCTTATGCCCCTGACAGTAGCCCTCTTTCTTATCCCTGCCCCTTCTCCCTAACTCTGCAC
CTCCTACCTAGCCCTGCCCCATCTCCATACGCTTCCTCATTTTATTGCTGTATTCGCTTT
ACTCTGTATTTCTCTCTATTACTAATACTGTATTGATGTTATAATAAAAATTCAATAAAG
ATTTAGTGGTTAAGTGCAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AATTATTACGCAAAGTCAATAGTCTACCTTTTGAAACAAATTGGCAAAATTGATTGACTT
TTGGCCCAAATTTTCAGTGTGAATTAAAAAAATCAAGGAAAAAGATATAAGCTCCCATTG
TTACACAGCCTCGGAGAGAATTATGCTAGATTGTTGAGACAGGAAGTTTACATATGTTTA
TGAAGGGTCAGTTTAGGTTGAGCAATGAGGTATTTGTATTAGGTCTTGGAAAATGGAGAA
TTAGTTGGATTAAATCATGTGAGCTCACACAGTGAACTTGCAGGTGCACAAAGTAAGAGG
GCACATCTGTATAGTGCAGTCTGGATTTCTGTTTGAGTTTACAGGTACCTCTTGGACTCC
TGAATTGATCCAGTTGTCATCCACCACAGACGTCTAACATCAGATGGAATCCCAAGATTG
GCAACAGAGAACATTCTGCTGGAAAGACCTGGGCAGAAGTGAAGGAACACCTGCAGAGAT
GAAGTGCTAGATGGGAACCACGCTACGTTTTCATCAAAAGAATGCGTGTCACTTGGGACT
GAAAGTTCTTTGTTGTTTCAGATTGTAGAGTGCTATCAAATTGGTCTGTGGAAAATTGCA
TTGTTCTTATTTCTTTGTGTAATCTTAAACTTAAGTAATTGGGGATATATATAATCTTAA
GTATTTTAGAGAGGGTGGGACTATTAAGTAATCTTAAGTGGGTGGGATTAGTTCAAAAGC
ATGATATTATGTATTAGATATCTCTATAAGTGGACACGTGTACTTACTTGTGATCCTTTA
CCCTATGATTGCTACCCCTAGAGATTTCAAATAAACTTGGAGGGAACTGCAGGGAGATCA
ATCTTTTTAGGGCTATCAGACGTGGATAAAAACCTAGTGGGAGAAAGTTCAGTTGATTGG
ATAAGTAGTTTAATAGAAGTTCTTTGCCCTGGATATTAACTCCAGGAATTAAGATTGTAA
GCAAAGCCTTTAGCGAGTTAGGATGGATAGATGCCCTTTGAGCAATTGTTGCTGGAGTGA
GGTTGATGATGGTAAATGGTAAAGATTCATGGAAGTTCTAGGAAAGTGATAAGAACTGTT
GCTTATGCCCCTGACAGTAGCCCTCTTTCTTATCCCTGCCCCTTCTCCCTAACTCTGCAC
CTCCTACCTAGCCCTGCCCCATCTCCATACGCTTCCTCATTTTATTGCTGTATTCGCTTT
ACTCTGTATTTCTCTCTATTACTAATACTGTATTGATGTTATAATAAAAATTCAATAAAG
ATTTAGTGGTTAAGTGCAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-826, gnl|bosTau2|chr4 (2046755-2047579) |
|
3-826, gnl|Hg17|chr7 (93942475-93943297) |
| |
|
862-1136, gnl|bosTau2|chr19 (50880697-50880420) |
|
862-1136, gnl|canFam2|chr14 (23080980-23081260) |
|
862-1136, gnl|dasNov1|scaffold_140870 (6370-6733) |
|
862-1136, gnl|hg17|chr7 (93943336-93943601) |
|
862-1136, gnl|mm7|chr6 (4712897-4713343) |
|
862-1136, gnl|panTro1|chr6 (95543948-95544213) |
|
862-1136, gnl|rheMac2|chr3 (122598175-122597909) |
| |
|
1143-1281, gnl|bosTau2|chr19 (50880451-50880315) |
|
1143-1281, gnl|Hg17|chr7 (93943511-93943658) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-826, gnl|bosTau2|chr4 (2046755-2047579) |
|
3-826, gnl|Hg17|chr7 (93942475-93943297) |
| |
|
862-1136, gnl|bosTau2|chr19 (50880697-50880420) |
|
862-1136, gnl|canFam2|chr14 (23080980-23081260) |
|
862-1136, gnl|dasNov1|scaffold_140870 (6370-6733) |
|
862-1136, gnl|hg17|chr7 (93943336-93943601) |
|
862-1136, gnl|mm7|chr6 (4712897-4713343) |
|
862-1136, gnl|panTro1|chr6 (95543948-95544213) |
|
862-1136, gnl|rheMac2|chr3 (122598175-122597909) |
| |
|
1143-1281, gnl|bosTau2|chr19 (50880451-50880315) |
|
1143-1281, gnl|Hg17|chr7 (93943511-93943658) |
|
fli (2.02881) |
|
ese (1.89753) |
|
pgl (1.54028) |
|
ebs (1.06471) |
|
eye (0.682012) |
|
ece (0.45861) |
|
nms (0.427716) |
|
amn (0.417711) |
|
eru (0.360144) |
|
fbs (0.350693) |
|
sme (0.305437) |
|
eli (0.303628) |
|
fce (0.271592) |
|
ute (0.265569) |
|
sug (0.254582) |
|
eep (0.245128) |
|
fcc (0.197785) |
|
isp (0.150376) |
|
nca (0.136874) |
|
ova (0.129132) |
|
bla (0.124347) |
|
med (0.116252) |
|
ecc (0.115035) |
|
fli (2.02881) |
|
ese (1.89753) |
|
pgl (1.54028) |
|
ebs (1.06471) |
|
eye (0.682012) |
|
ece (0.45861) |
|
nms (0.427716) |
|
amn (0.417711) |
|
eru (0.360144) |
|
fbs (0.350693) |
|
sme (0.305437) |
|
eli (0.303628) |
|
fce (0.271592) |
|
ute (0.265569) |
|
sug (0.254582) |
|
eep (0.245128) |
|
fcc (0.197785) |
|
isp (0.150376) |
|
nca (0.136874) |
|
ova (0.129132) |
|
bla (0.124347) |
|
med (0.116252) |
|
ecc (0.115035) |
