Non-Coding RNA Search

Ss1.1-rpgl27_o22.5

Sequence:


               
               AATGTTATTTTGACGTAATGTGGTATTGTACCACAAAGTAGATCTAAATGAGCTTTATGC
TATATTTGAACTAGTTGGGGCATGTTATGGGGAGGAGGTGGGGGGATTTTGGTTATGTTA
AATGTTTGATGTTGAAATTGTTGCATGTTGAATTCAAACTTTTTAACAAGTCCTTGATGT
TTCAATTTGAAAGTGACCAATGGGGCTGAGGCTGTGTCCACTGAGGCTAAGATGACTGCC
TTTCCTGATTGGCCTTGGCTTTTCCATACATTGTGTGACCCTTGCCCTATGACCCTTTGG
CTGACCTTACCGGAAGCCATGACGACAGCAGCCTTTTGCCATTAGACGCAGGGTGATGGT
GAGGATTCCGAGGGTTAGACAAAACTGGTTAATCTGAACTAGGTGACTGTTACCTTGCGT
GTTTTGTGGCCAAACCACCACCAAAAACCTCACACTGTGATGTAAGTACTTAGTGTAACT
AGTAAACATTTTTGTAAAATGTAGAAATGCATGTAATCAGTTAAGTTTTATATTTTACAA
TGTTCTGTAAAATAAAACTTAGCGAGGTAAATTGAATAAAGGAGCAGTCACTCTCTAACA
GATTGTAGGAGAAGTTTAGTTGGATTTAGTCTATTTGACTTGCCCTTAATTTAATTTATG
GCAAATCACAACTGTATCGAAGGTTTAGCAATATAATAGCAAAATCCTACTCCAGTAAAT
AAAAGTTAATATGTTTGTACTAACTTTCAAAAACTATGCATCCCTATCATTACAAAACAC
CTAATTGTTCTCTTCATGTGATAAAGGTGGTGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGTTATTTTGACGTAATGTGGTATTGTACCACAAAGTAGATCTAAATGAGCTTTATGC
TATATTTGAACTAGTTGGGGCATGTTATGGGGAGGAGGTGGGGGGATTTTGGTTATGTTA
AATGTTTGATGTTGAAATTGTTGCATGTTGAATTCAAACTTTTTAACAAGTCCTTGATGT
TTCAATTTGAAAGTGACCAATGGGGCTGAGGCTGTGTCCACTGAGGCTAAGATGACTGCC
TTTCCTGATTGGCCTTGGCTTTTCCATACATTGTGTGACCCTTGCCCTATGACCCTTTGG
CTGACCTTACCGGAAGCCATGACGACAGCAGCCTTTTGCCATTAGACGCAGGGTGATGGT
GAGGATTCCGAGGGTTAGACAAAACTGGTTAATCTGAACTAGGTGACTGTTACCTTGCGT
GTTTTGTGGCCAAACCACCACCAAAAACCTCACACTGTGATGTAAGTACTTAGTGTAACT
AGTAAACATTTTTGTAAAATGTAGAAATGCATGTAATCAGTTAAGTTTTATATTTTACAA
TGTTCTGTAAAATAAAACTTAGCGAGGTAAATTGAATAAAGGAGCAGTCACTCTCTAACA
GATTGTAGGAGAAGTTTAGTTGGATTTAGTCTATTTGACTTGCCCTTAATTTAATTTATG
GCAAATCACAACTGTATCGAAGGTTTAGCAATATAATAGCAAAATCCTACTCCAGTAAAT
AAAAGTTAATATGTTTGTACTAACTTTCAAAAACTATGCATCCCTATCATTACAAAACAC
CTAATTGTTCTCTTCATGTGATAAAGGTGGTGGAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               332-686, + strand, RNAz p=0.903463

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               332-686, + strand, RNAz p=0.903463

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               482-570, + strand, RNAmicro p=0.922683

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               482-570, + strand, RNAmicro p=0.922683

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of U30828, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of U30828, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               332-816, gnl|bosTau2|chr13 (52822843-52822357)
               

               
               332-816, gnl|Hg17|chr20 (41521345-41521834)
               

               
               332-816, gnl|Mm7|chr2 (162673843-162674325)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               332-816, gnl|bosTau2|chr13 (52822843-52822357)
               

               
               332-816, gnl|Hg17|chr20 (41521345-41521834)
               

               
               332-816, gnl|Mm7|chr2 (162673843-162674325)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               pgl (0.236967)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	332-816, gnl\|bosTau2\|chr13 (52822843-52822357)
	332-816, gnl\|Hg17\|chr20 (41521345-41521834)
	332-816, gnl\|Mm7\|chr2 (162673843-162674325)

	pgl (0.236967)
	lun (0.150489)
	spl (0.143184)
	jca (0.11396)
	cty (0.10408)
	eje (0.0988338)
	ldo (0.0970026)