Ss1.1-rpgl28_e4.5
|
CCCATACCCGCCCCACCATCACCACCTCTTTTTTGCCAAATGATAAATCTGACCTCCTGA
GTTTCCATGGTCCTTTTTGTATCAGGTGAAAATACGGTCTCCTGGACAAGTATTTTTAAC
ATTAAGGTCTGGAACAGGATACTGTGGGTCGGGGACCCCGGCCCCTGTGATATTAGGACA
TCTCTGCCCGGGCCTGGAGCGGAGGCGCCCAGGCACACTTAACGTTGTTACTGCTCTGTC
TTCCACTGCTCTGGAATTCTACGTGTTGGTCCGTGGTTTCACCCATTAGCTGTTTGTAAA
CACTATGTGTACCTAAAAGAAACACCACCTGTCATCGCTGATGGTGGGGAAGCTCCTTTG
ACGTGGTGCAATTTTGATGAGATGGCTTTGGAGACATGAGGATGCCCTAATGACACTGAC
TTATCGTGGTTGCAGCATTTGAACTCTTTTTATATAAAGGAAACTGTAAGTCTATATATA
ACCTGGCAACATTTTACAACTCTGTATATTAAAGATGGCTTTCTCATAAAATCCAGAACC
ACACAGCCCGATGGTCAAACACTCGTGACGTTTGTGCCTCTGCTTCTAAAGGTGCTGTGA
TGGACAGCTGGCATGCCAGGGTTTGAGAAGAGTGGAGAGTTTGAAGTGCTTGCATTTACC
TGTGCAAAATCAACTGGCTGCCTCTGTTCCTAATTTACTGTAAATCCGTTCCTGTCTCAT
TCACCAGGGAGCTTCTCTGTAAAGTAACACCCCCTCCCCAAATGGTGGAGATGCTGGTGT
CTGGGTTGTCATGGGTTTCTGTTGGACTTTTGAATGTGATAAACAATCTAGTATCACTTG
GGAAATACTACGTGTAGAATGTGCACGTTTCCAGGGGCGAGCATTGTCGGTCAAGAGATT
TGCAATGATTTCCTTCCTGCCAAAAATAAATACGTGAAACTGCAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCCATACCCGCCCCACCATCACCACCTCTTTTTTGCCAAATGATAAATCTGACCTCCTGA
GTTTCCATGGTCCTTTTTGTATCAGGTGAAAATACGGTCTCCTGGACAAGTATTTTTAAC
ATTAAGGTCTGGAACAGGATACTGTGGGTCGGGGACCCCGGCCCCTGTGATATTAGGACA
TCTCTGCCCGGGCCTGGAGCGGAGGCGCCCAGGCACACTTAACGTTGTTACTGCTCTGTC
TTCCACTGCTCTGGAATTCTACGTGTTGGTCCGTGGTTTCACCCATTAGCTGTTTGTAAA
CACTATGTGTACCTAAAAGAAACACCACCTGTCATCGCTGATGGTGGGGAAGCTCCTTTG
ACGTGGTGCAATTTTGATGAGATGGCTTTGGAGACATGAGGATGCCCTAATGACACTGAC
TTATCGTGGTTGCAGCATTTGAACTCTTTTTATATAAAGGAAACTGTAAGTCTATATATA
ACCTGGCAACATTTTACAACTCTGTATATTAAAGATGGCTTTCTCATAAAATCCAGAACC
ACACAGCCCGATGGTCAAACACTCGTGACGTTTGTGCCTCTGCTTCTAAAGGTGCTGTGA
TGGACAGCTGGCATGCCAGGGTTTGAGAAGAGTGGAGAGTTTGAAGTGCTTGCATTTACC
TGTGCAAAATCAACTGGCTGCCTCTGTTCCTAATTTACTGTAAATCCGTTCCTGTCTCAT
TCACCAGGGAGCTTCTCTGTAAAGTAACACCCCCTCCCCAAATGGTGGAGATGCTGGTGT
CTGGGTTGTCATGGGTTTCTGTTGGACTTTTGAATGTGATAAACAATCTAGTATCACTTG
GGAAATACTACGTGTAGAATGTGCACGTTTCCAGGGGCGAGCATTGTCGGTCAAGAGATT
TGCAATGATTTCCTTCCTGCCAAAAATAAATACGTGAAACTGCAAAAAAAAAAAAAAAAA |
|
20-162, gnl|bosTau2|chr22 (9001602-9001459) |
|
20-162, gnl|canFam2|chr23 (10769952-10770295) |
|
20-162, gnl|dasNov1|scaffold_169659 (4216-3882) |
|
20-162, gnl|echTel1|scaffold_219391 (15988-16327) |
|
20-162, gnl|galGal2|chr2 (4044105-4044492) |
|
20-162, gnl|hg17|chr3 (37999815-38000160) |
|
20-162, gnl|Hg17|chr3 (38000014-38000185) |
|
20-162, gnl|loxAfr1|scaffold_132500 (4270-3918) |
|
20-162, gnl|mm7|chr9 (118723238-118723565) |
|
20-162, gnl|Mm7|chr9 (118723422-118723576) |
|
20-162, gnl|monDom2|scaffold_390 (49772-49439) |
|
20-162, gnl|panTro1|chr2 (39105220-39105565) |
|
20-162, gnl|rheMac2|chr2 (98560268-98559923) |
|
20-162, gnl|rn3|chr8 (124012247-124012577) |
| |
|
182-944, gnl|bosTau2|chr22 (9001465-9000711) |
|
182-944, gnl|Hg17|chr3 (38000179-38000964) |
|
182-944, gnl|Mm7|chr9 (118723557-118724323) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
20-162, gnl|bosTau2|chr22 (9001602-9001459) |
|
20-162, gnl|canFam2|chr23 (10769952-10770295) |
|
20-162, gnl|dasNov1|scaffold_169659 (4216-3882) |
|
20-162, gnl|echTel1|scaffold_219391 (15988-16327) |
|
20-162, gnl|galGal2|chr2 (4044105-4044492) |
|
20-162, gnl|hg17|chr3 (37999815-38000160) |
|
20-162, gnl|Hg17|chr3 (38000014-38000185) |
|
20-162, gnl|loxAfr1|scaffold_132500 (4270-3918) |
|
20-162, gnl|mm7|chr9 (118723238-118723565) |
|
20-162, gnl|Mm7|chr9 (118723422-118723576) |
|
20-162, gnl|monDom2|scaffold_390 (49772-49439) |
|
20-162, gnl|panTro1|chr2 (39105220-39105565) |
|
20-162, gnl|rheMac2|chr2 (98560268-98559923) |
|
20-162, gnl|rn3|chr8 (124012247-124012577) |
| |
|
182-944, gnl|bosTau2|chr22 (9001465-9000711) |
|
182-944, gnl|Hg17|chr3 (38000179-38000964) |
|
182-944, gnl|Mm7|chr9 (118723557-118724323) |
|
cmu (0.931966) |
|
pro (0.512033) |
|
bla (0.248694) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
sag (0.182715) |
|
sto (0.179824) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
fat (0.147427) |
|
che (0.136314) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
ova (0.129132) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
cmu (0.931966) |
|
pro (0.512033) |
|
bla (0.248694) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
sag (0.182715) |
|
sto (0.179824) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
fat (0.147427) |
|
che (0.136314) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
ova (0.129132) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
cty (0.10408) |
|
jej (0.0989218) |
