Ss1.1-rpgl28_l19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTACACCCTCATTGAGAGGAACAACCGCCAGATGCTGCCTGTTATCAGAAACACTGCTG GGGGGGACTCGGTGCAAACCTGCACAAACCCCCTGGACACCTTCTTCCCCTTCGATCCTT GTGTGCTGAAGAGGTCAAAGAAGTTCATCGATCCTGTTTATCAGGTGTGGGAAGACCTGA GTGCAGAAGAGCTTCAGGAGTTGAAGAAACCCATTAAAAAGGAGGAGGCGGAAGACGAAG AAGATGACTTTCTGAAAGGTGAAGCTGGGGTGACGCCGAGCTCCTTTGACGCGCATTTCC GAAGTCCTTCGAGTAGCGTGGGCTCCCCACCTGTCTTGTACCTGCCTGACCAGTCGCCCC TGATGGCAAAGATGTGTGATTGACACACACTGCTCCCATCATGCTCGGCGGCACCAGGCT TCGTATTTTTCACCATCGCTTTGAACTAGAGCAAGTGTGTGCCTCAGGCATCTTCCTTTC AAGTCCGACTAACTCCAGTGTCTGAACAGGTTTTTTTGTTTTTCTTTTCTGTTTTGCACC TCGATAGACAAAAGGAAGAGGCAGACCATCATGTGCACCGTTTTACAGTGGAGTTGGTGA TAAATGTGGAAAGCGTGGCTTGTTTGTTGAAAGTATACATTTTTTGGTTACAGCTTTTTG ACATCATTATCATGAAATTTCCAAAGTCGGCAACTGCCCATTTTTAACAGATTGCCTTTT TAACAAGGTTTTTGTCACAACCATAGTCCCAAGGCTTGGTTGATAAGATATCTTTTCATA GAAAAAAATCCTCTGGGACACTATTTCAAGCCTTCAGAATGAGTATAACTGGTTGGGTTA CATTGCCCACCCTCTGCTGTAACTGTACTTGTGTGTTGGGGTCCAGCGGACACAGAGAAG AGAAGAGGAGAAGGTGGGGAGGTGGCCAGAGCTGGTCCTGATGCTGCAGGTTGCAGCTGG CACTGAAGGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTACACCCTCATTGAGAGGAACAACCGCCAGATGCTGCCTGTTATCAGAAACACTGCTG GGGGGGACTCGGTGCAAACCTGCACAAACCCCCTGGACACCTTCTTCCCCTTCGATCCTT GTGTGCTGAAGAGGTCAAAGAAGTTCATCGATCCTGTTTATCAGGTGTGGGAAGACCTGA GTGCAGAAGAGCTTCAGGAGTTGAAGAAACCCATTAAAAAGGAGGAGGCGGAAGACGAAG AAGATGACTTTCTGAAAGGTGAAGCTGGGGTGACGCCGAGCTCCTTTGACGCGCATTTCC GAAGTCCTTCGAGTAGCGTGGGCTCCCCACCTGTCTTGTACCTGCCTGACCAGTCGCCCC TGATGGCAAAGATGTGTGATTGACACACACTGCTCCCATCATGCTCGGCGGCACCAGGCT TCGTATTTTTCACCATCGCTTTGAACTAGAGCAAGTGTGTGCCTCAGGCATCTTCCTTTC AAGTCCGACTAACTCCAGTGTCTGAACAGGTTTTTTTGTTTTTCTTTTCTGTTTTGCACC TCGATAGACAAAAGGAAGAGGCAGACCATCATGTGCACCGTTTTACAGTGGAGTTGGTGA TAAATGTGGAAAGCGTGGCTTGTTTGTTGAAAGTATACATTTTTTGGTTACAGCTTTTTG ACATCATTATCATGAAATTTCCAAAGTCGGCAACTGCCCATTTTTAACAGATTGCCTTTT TAACAAGGTTTTTGTCACAACCATAGTCCCAAGGCTTGGTTGATAAGATATCTTTTCATA GAAAAAAATCCTCTGGGACACTATTTCAAGCCTTCAGAATGAGTATAACTGGTTGGGTTA CATTGCCCACCCTCTGCTGTAACTGTACTTGTGTGTTGGGGTCCAGCGGACACAGAGAAG AGAAGAGGAGAAGGTGGGGAGGTGGCCAGAGCTGGTCCTGATGCTGCAGGTTGCAGCTGG CACTGAAGGAGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 1-135, gnl|bosTau2|chr25 (14431512-14431378) | |
| 1-135, gnl|canFam2|chr6 (31511564-31511738) | |
| 1-135, gnl|canFam2|chr6 (31511738-31511565) | |
| 1-135, gnl|canFam2|chr6 (31511580-31511738) | |
| 1-135, gnl|canFam2|chr6 (31511735-31511584) | |
| 1-135, gnl|danRer3|chr3 (32485666-32485508) | |
| 1-135, gnl|danRer3|chr3 (32485508-32485666) | |
| 1-135, gnl|danRer3|chr3 (32485666-32485508) | |
| 1-135, gnl|dasNov1|scaffold_17561 (7691-7858) | |
| 1-135, gnl|dasNov1|scaffold_17561 (7858-7691) | |
| 1-135, gnl|dasNov1|scaffold_17561 (7700-7858) | |
| 1-135, gnl|dasNov1|scaffold_17561 (7855-7703) | |
| 1-135, gnl|echTel1|scaffold_289914 (37208-37035) | |
| 1-135, gnl|echTel1|scaffold_289914 (37035-37208) | |
| 1-135, gnl|echTel1|scaffold_289914 (37193-37035) | |
| 1-135, gnl|echTel1|scaffold_289914 (37038-37190) | |
| 1-135, gnl|fr1|chrUn (229597564-229597408) | |
| 1-135, gnl|fr1|chrUn (229597408-229597564) | |
| 1-135, gnl|fr1|chrUn (229597564-229597408) | |
| 1-135, gnl|galGal2|chr14 (2289234-2289391) | |
| 1-135, gnl|galGal2|chr14 (2289391-2289234) | |
| 1-135, gnl|galGal2|chr14 (2289234-2289391) | |
| 1-135, gnl|hg17|chr16 (15066560-15066733) | |
| 1-135, gnl|hg17|chr16 (29020807-29020980) | |
| 1-135, gnl|hg17|chr16 (22348616-22348774) | |
| 1-135, gnl|Hg17|chr16 (15066709-15066575) | |
| 1-135, gnl|hg17|chr2 (143446940-143447072) | |
| 1-135, gnl|loxAfr1|scaffold_58968 (3684-3510) | |
| 1-135, gnl|loxAfr1|scaffold_58968 (3510-3684) | |
| 1-135, gnl|loxAfr1|scaffold_58968 (3668-3510) | |
| 1-135, gnl|loxAfr1|scaffold_58968 (3513-3665) | |
| 1-135, gnl|mm7|chr16 (13357177-13357010) | |
| 1-135, gnl|mm7|chr16 (13357010-13357177) | |
| 1-135, gnl|mm7|chr16 (13357168-13357010) | |
| 1-135, gnl|mm7|chr16 (13357013-13357164) | |
| 1-135, gnl|Mm7|chr16 (13357032-13357166) | |
| 1-135, gnl|monDom2|scaffold_17 (28035161-28035337) | |
| 1-135, gnl|monDom2|scaffold_17 (28035337-28035161) | |
| 1-135, gnl|monDom2|scaffold_17 (28035179-28035337) | |
| 1-135, gnl|monDom2|scaffold_17 (28035334-28035184) | |
| 1-135, gnl|oryCun1|scaffold_145360 (5510-5337) | |
| 1-135, gnl|oryCun1|scaffold_145360 (5337-5510) | |
| 1-135, gnl|oryCun1|scaffold_145360 (5495-5337) | |
| 1-135, gnl|oryCun1|scaffold_145360 (5340-5490) | |
| 1-135, gnl|panTro1|chr13 (32490239-32490371) | |
| 1-135, gnl|panTro1|chr18 (15466105-15466278) | |
| 1-135, gnl|panTro1|chr18 (15466278-15466105) | |
| 1-135, gnl|panTro1|chr18_random (10859120-10859278) | |
| 1-135, gnl|rheMac2|chr12 (6399351-6399483) | |
| 1-135, gnl|rheMac2|chr20 (14945837-14945665) | |
| 1-135, gnl|rheMac2|chr20 (14945665-14945837) | |
| 1-135, gnl|rheMac2|chr20 (14945823-14945665) | |
| 1-135, gnl|rn3|chr10 (1523368-1523203) | |
| 1-135, gnl|rn3|chr10 (1523203-1523368) | |
| 1-135, gnl|rn3|chr10 (1523361-1523203) | |
| 1-135, gnl|rn3|chr10 (1523206-1523357) | |
| 1-135, gnl|tetNig1|chrUn_random (36659207-36659365) | |
| 1-135, gnl|tetNig1|chrUn_random (36659365-36659207) | |
| 1-135, gnl|tetNig1|chrUn_random (36659207-36659365) | |
| 1-135, gnl|tetNig1|chrUn_random (36659361-36659210) | |
| 1-135, gnl|xenTro1|scaffold_290 (267847-268019) | |
| 1-135, gnl|xenTro1|scaffold_290 (268020-267847) | |
| 1-135, gnl|xenTro1|scaffold_290 (267855-268019) | |
| 220-620, gnl|bosTau2|chr25 (14429392-14428971) | |
| 220-620, gnl|Hg17|chr16 (15063265-15062834) | |
| 220-620, gnl|Mm7|chr16 (13359596-13360006) | |
| 742-972, gnl|bosTau2|chr25 (14428970-14428740) | |
| 742-972, gnl|Hg17|chr16 (15062833-15062495) | |
| 742-972, gnl|Mm7|chr16 (13360022-13360262) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-135, gnl|bosTau2|chr25 (14431512-14431378) | |
| 1-135, gnl|canFam2|chr6 (31511564-31511738) | |
| 1-135, gnl|canFam2|chr6 (31511738-31511565) | |
| 1-135, gnl|canFam2|chr6 (31511580-31511738) | |
| 1-135, gnl|canFam2|chr6 (31511735-31511584) | |
| 1-135, gnl|danRer3|chr3 (32485666-32485508) | |
| 1-135, gnl|danRer3|chr3 (32485508-32485666) | |
| 1-135, gnl|danRer3|chr3 (32485666-32485508) | |
| 1-135, gnl|dasNov1|scaffold_17561 (7691-7858) | |
| 1-135, gnl|dasNov1|scaffold_17561 (7858-7691) | |
| 1-135, gnl|dasNov1|scaffold_17561 (7700-7858) | |
| 1-135, gnl|dasNov1|scaffold_17561 (7855-7703) | |
| 1-135, gnl|echTel1|scaffold_289914 (37208-37035) | |
| 1-135, gnl|echTel1|scaffold_289914 (37035-37208) | |
| 1-135, gnl|echTel1|scaffold_289914 (37193-37035) | |
| 1-135, gnl|echTel1|scaffold_289914 (37038-37190) | |
| 1-135, gnl|fr1|chrUn (229597564-229597408) | |
| 1-135, gnl|fr1|chrUn (229597408-229597564) | |
| 1-135, gnl|fr1|chrUn (229597564-229597408) | |
| 1-135, gnl|galGal2|chr14 (2289234-2289391) | |
| 1-135, gnl|galGal2|chr14 (2289391-2289234) | |
| 1-135, gnl|galGal2|chr14 (2289234-2289391) | |
| 1-135, gnl|hg17|chr16 (15066560-15066733) | |
| 1-135, gnl|hg17|chr16 (29020807-29020980) | |
| 1-135, gnl|hg17|chr16 (22348616-22348774) | |
| 1-135, gnl|Hg17|chr16 (15066709-15066575) | |
| 1-135, gnl|hg17|chr2 (143446940-143447072) | |
| 1-135, gnl|loxAfr1|scaffold_58968 (3684-3510) | |
| 1-135, gnl|loxAfr1|scaffold_58968 (3510-3684) | |
| 1-135, gnl|loxAfr1|scaffold_58968 (3668-3510) | |
| 1-135, gnl|loxAfr1|scaffold_58968 (3513-3665) | |
| 1-135, gnl|mm7|chr16 (13357177-13357010) | |
| 1-135, gnl|mm7|chr16 (13357010-13357177) | |
| 1-135, gnl|mm7|chr16 (13357168-13357010) | |
| 1-135, gnl|mm7|chr16 (13357013-13357164) | |
| 1-135, gnl|Mm7|chr16 (13357032-13357166) | |
| 1-135, gnl|monDom2|scaffold_17 (28035161-28035337) | |
| 1-135, gnl|monDom2|scaffold_17 (28035337-28035161) | |
| 1-135, gnl|monDom2|scaffold_17 (28035179-28035337) | |
| 1-135, gnl|monDom2|scaffold_17 (28035334-28035184) | |
| 1-135, gnl|oryCun1|scaffold_145360 (5510-5337) | |
| 1-135, gnl|oryCun1|scaffold_145360 (5337-5510) | |
| 1-135, gnl|oryCun1|scaffold_145360 (5495-5337) | |
| 1-135, gnl|oryCun1|scaffold_145360 (5340-5490) | |
| 1-135, gnl|panTro1|chr13 (32490239-32490371) | |
| 1-135, gnl|panTro1|chr18 (15466105-15466278) | |
| 1-135, gnl|panTro1|chr18 (15466278-15466105) | |
| 1-135, gnl|panTro1|chr18_random (10859120-10859278) | |
| 1-135, gnl|rheMac2|chr12 (6399351-6399483) | |
| 1-135, gnl|rheMac2|chr20 (14945837-14945665) | |
| 1-135, gnl|rheMac2|chr20 (14945665-14945837) | |
| 1-135, gnl|rheMac2|chr20 (14945823-14945665) | |
| 1-135, gnl|rn3|chr10 (1523368-1523203) | |
| 1-135, gnl|rn3|chr10 (1523203-1523368) | |
| 1-135, gnl|rn3|chr10 (1523361-1523203) | |
| 1-135, gnl|rn3|chr10 (1523206-1523357) | |
| 1-135, gnl|tetNig1|chrUn_random (36659207-36659365) | |
| 1-135, gnl|tetNig1|chrUn_random (36659365-36659207) | |
| 1-135, gnl|tetNig1|chrUn_random (36659207-36659365) | |
| 1-135, gnl|tetNig1|chrUn_random (36659361-36659210) | |
| 1-135, gnl|xenTro1|scaffold_290 (267847-268019) | |
| 1-135, gnl|xenTro1|scaffold_290 (268020-267847) | |
| 1-135, gnl|xenTro1|scaffold_290 (267855-268019) | |
| 220-620, gnl|bosTau2|chr25 (14429392-14428971) | |
| 220-620, gnl|Hg17|chr16 (15063265-15062834) | |
| 220-620, gnl|Mm7|chr16 (13359596-13360006) | |
| 742-972, gnl|bosTau2|chr25 (14428970-14428740) | |
| 742-972, gnl|Hg17|chr16 (15062833-15062495) | |
| 742-972, gnl|Mm7|chr16 (13360022-13360262) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ldo (0.194005) | |
| cst (0.140036) | |
| pgl (0.118483) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ldo (0.194005) | |
| cst (0.140036) | |
| pgl (0.118483) | |
| eje (0.0988338) |