Non-Coding RNA Search

Ss1.1-rpgl29_b7.5

Sequence:


               
               AGAAGGCTTCTGGCAACTTCCATACCTATCCATTCTTTGGAGTTGGTTTCTCTTATTGCT
TTTTCTTGATCTGGTTTCATTTATTTACCTGGGGCCTTCCTTTTCTGAGGATGTTCTAGA
ATCAATCTACTTGGTTATCCAGGGTTAAAGGGTTAAGGGATAGACATGGGGGAAGAAGGA
GAGAGATGGGAAGAGAATGGAGAGAATATGGCTAAAATCTGGGAAAGGAGAGCACTGTTC
ATTGATCACTTTTCCAGTCCAGCCTGAATCATTGGGGCATTGAGATGCTACTGCTGGCCT
CTGGGGATAAGCGGGGGCTGTTGTTGCTGGGAACTTAGGCTTAGATCAAGGCTGAAGAAG
AAGGTACCTGAAAGTATGGAACCTCCCTAAAAAGCTCCTGTTTCCCACCTACTCAATAGC
TCCTCCATAGCCTCCTCTTTGGCCAAGCAACGATGTTCTTGGATAGTTTTCTTTTTCTTG
TCTAGAGTTCTATAAATGAGGACAACAAGATGGGCACCCAAGGGAACGCTGGCTTCTTAA
CTGACCCATGGGATAGCTTCGAGGCTGGTGGACAGTGTTTTAGATCTGGCATCATGTGTA
ACAAGGATGAGAGTTCCTTCCCCTTCAGGGTAGAAAGTCATCTCAAACAAACTAATATGC
AGTTTGGGAAACTACATTGGGGGAAGCTATTTTTATTTACATTGATTGAGCCTAGGCCAA
TCCAGGATGGTAGCTGGTATGCCTTCCTTCTTAATGTCTGATCATGGTAGGATTATGCAG
GGCACTCTTTCCTTTTGGGCCTTCTAAGCAGACTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGGCTTCTGGCAACTTCCATACCTATCCATTCTTTGGAGTTGGTTTCTCTTATTGCT
TTTTCTTGATCTGGTTTCATTTATTTACCTGGGGCCTTCCTTTTCTGAGGATGTTCTAGA
ATCAATCTACTTGGTTATCCAGGGTTAAAGGGTTAAGGGATAGACATGGGGGAAGAAGGA
GAGAGATGGGAAGAGAATGGAGAGAATATGGCTAAAATCTGGGAAAGGAGAGCACTGTTC
ATTGATCACTTTTCCAGTCCAGCCTGAATCATTGGGGCATTGAGATGCTACTGCTGGCCT
CTGGGGATAAGCGGGGGCTGTTGTTGCTGGGAACTTAGGCTTAGATCAAGGCTGAAGAAG
AAGGTACCTGAAAGTATGGAACCTCCCTAAAAAGCTCCTGTTTCCCACCTACTCAATAGC
TCCTCCATAGCCTCCTCTTTGGCCAAGCAACGATGTTCTTGGATAGTTTTCTTTTTCTTG
TCTAGAGTTCTATAAATGAGGACAACAAGATGGGCACCCAAGGGAACGCTGGCTTCTTAA
CTGACCCATGGGATAGCTTCGAGGCTGGTGGACAGTGTTTTAGATCTGGCATCATGTGTA
ACAAGGATGAGAGTTCCTTCCCCTTCAGGGTAGAAAGTCATCTCAAACAAACTAATATGC
AGTTTGGGAAACTACATTGGGGGAAGCTATTTTTATTTACATTGATTGAGCCTAGGCCAA
TCCAGGATGGTAGCTGGTATGCCTTCCTTCTTAATGTCTGATCATGGTAGGATTATGCAG
GGCACTCTTTCCTTTTGGGCCTTCTAAGCAGACTGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               81-198, - strand, RNAz p=0.837688
               

               
               592-705, - strand, RNAz p=0.922999

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-198, - strand, RNAz p=0.837688
               

               
               592-705, - strand, RNAz p=0.922999

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-812, gnl|bosTau2|chr3 (76955922-76955105)
               

               
               2-812, gnl|Hg17|chr1 (36057519-36058319)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-812, gnl|bosTau2|chr3 (76955922-76955105)
               

               
               2-812, gnl|Hg17|chr1 (36057519-36058319)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.175346)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               pgl (0.118483)

	81-198, - strand, RNAz p=0.837688
	592-705, - strand, RNAz p=0.922999

	2-812, gnl\|bosTau2\|chr3 (76955922-76955105)
	2-812, gnl\|Hg17\|chr1 (36057519-36058319)