Non-Coding RNA Search

Ss1.1-rpgl29_n3.5

Sequence:


               
               GAACCGGGGGCCGTCACTTCGGAGTTAGGGCTGAGGCGTCCTTGGGGGAGAGCGCGCCAA
GACCGCTGCAGCCGCTGGCCGAGTTAAGTCCATTCACAGTAATGGCCACGGCCTTACCCC
GGACCCTGGGGGAGTTGCAGCTGTATAGAATATTACAAAAAGCCAATCTGCTTTCTTATT
TTGATGCCTTCATCCAACAAGGTGGCGATGATGTCCAGCAACTCTGTGAGGCTGGAGAAG
AGGAATTCTTGGAAATTATGGCACTGGTGGGCATGGCTAGCAAGCCCCTTCATGTTAGAA
GGCTATAGAAAGCTTTGAGAGACTGGGTTACAAACCCTGGCCTTTTTAATCAGCCACTGA
CATCCCTTCCTGTCAGTAGCATACCCATCTATAAATTACCAGAGGGATCACCAACGTGGC
TGGGAATATCCTGTAGCAGTTATGAAAGGAATAGCAATGCCCGGGAACCTCATTTAAAAA
TTCCCAAGTGTGCTGCCACCACTTGCGTGCAGAGCTTGGGACAGGGGAAATCAGACGTGG
TGGGGAGCTTAGCTCTGCAGAGTATCAGTGAGTCCAGACTCTGGCAAGGCCACCATGCCA
CTGAGAGTGAGCACAGCCTCTCCCCAGCTGACCTTGGCTCTCCTGCTTCCCCAAAAGAAA
GTAGTGAGGCACTGGATGCTGCTGCCGCACTCTCTGTAGCTGAGTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACCGGGGGCCGTCACTTCGGAGTTAGGGCTGAGGCGTCCTTGGGGGAGAGCGCGCCAA
GACCGCTGCAGCCGCTGGCCGAGTTAAGTCCATTCACAGTAATGGCCACGGCCTTACCCC
GGACCCTGGGGGAGTTGCAGCTGTATAGAATATTACAAAAAGCCAATCTGCTTTCTTATT
TTGATGCCTTCATCCAACAAGGTGGCGATGATGTCCAGCAACTCTGTGAGGCTGGAGAAG
AGGAATTCTTGGAAATTATGGCACTGGTGGGCATGGCTAGCAAGCCCCTTCATGTTAGAA
GGCTATAGAAAGCTTTGAGAGACTGGGTTACAAACCCTGGCCTTTTTAATCAGCCACTGA
CATCCCTTCCTGTCAGTAGCATACCCATCTATAAATTACCAGAGGGATCACCAACGTGGC
TGGGAATATCCTGTAGCAGTTATGAAAGGAATAGCAATGCCCGGGAACCTCATTTAAAAA
TTCCCAAGTGTGCTGCCACCACTTGCGTGCAGAGCTTGGGACAGGGGAAATCAGACGTGG
TGGGGAGCTTAGCTCTGCAGAGTATCAGTGAGTCCAGACTCTGGCAAGGCCACCATGCCA
CTGAGAGTGAGCACAGCCTCTCCCCAGCTGACCTTGGCTCTCCTGCTTCCCCAAAAGAAA
GTAGTGAGGCACTGGATGCTGCTGCCGCACTCTCTGTAGCTGAGTGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3372534|gb|AAC28325.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3372534|gb|AAC28325.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               202-561, - strand, RNAz p=0.836386
               

               
               591-708, - strand, RNAz p=0.992571

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-561, - strand, RNAz p=0.836386
               

               
               591-708, - strand, RNAz p=0.992571

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               83-708, gnl|bosTau2|chr2 (2746618-2747243)
               

               
               83-708, gnl|Hg17|chr2 (191349390-191350015)
               

               
               83-708, gnl|Mm7|chr1 (52725165-52724543)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-708, gnl|bosTau2|chr2 (2746618-2747243)
               

               
               83-708, gnl|Hg17|chr2 (191349390-191350015)
               

               
               83-708, gnl|Mm7|chr1 (52725165-52724543)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cki (0.165235)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               pgl (0.118483)

	202-561, - strand, RNAz p=0.836386
	591-708, - strand, RNAz p=0.992571

	83-708, gnl\|bosTau2\|chr2 (2746618-2747243)
	83-708, gnl\|Hg17\|chr2 (191349390-191350015)
	83-708, gnl\|Mm7\|chr1 (52725165-52724543)