Non-Coding RNA Search

Ss1.1-rpgl29_n6.5.5

Sequence:


               
               CCACACTCCTTGGGGCCTAGGGCCCAGGCGAGGTGGCACTCACCTTGGGCTCTGCCCCCC
TTGCCCCTCACCCGCAAGAGCCCCTGGGGCAGAGGTAGGGTGGGGGCAAGGACAGGTGCT
GGGCAGAGCCGAGACCTCCAGCCTCGAGTTCCAGAACCGATGGGAAACCTGCAGATTGCC
TTTGCTCTGTTCGCTGCCCCCTCTCTCCTGCCTCTCCTCAGGTCCTGCTCAGCAGTGAGA
GAAAAAAGGCCAAGAGGTTTGGCTCCTGCCCACTGGTAGTCCCTGTCCCCGCAGTGTTTG
CGTGTCAAGTGACAAAGCTGTTCTTCCTGGTGACCCTGATTCTCTGCAGTATCTTGTAGA
CTATACGCATAGGCCTGCTTGGTCTCTTCTGTCCTGGGCTTTTGTTTTGCTTTTTAGTTT
TGCTTTTAGTTCTGTCCCTTTTATTTAATGCACCGAGTAGACACACAGAGCGGTTGAAGT
TTTATATCTATATATATCTGTATATTGCACAGTTATAAACTCATTTTGCTTGTGGCTCCA
CACACAAAAAAAGACCTGTTAAAATTATACCTGTTGCTTAATTACAATATTTCTGATAAC
CATAGCATAGGACAAGGGAAAATAAAAAAAAAAAAGACCAAAAAAACAAAAAAAAAAAAA
CAAACAAATGAAAAAAAAAAACGACAAATCTGTCTGCTGGTCACTTCTTCTGTCCAAGCA
AATCCGTGGTCTTTCCTCGCTTTTTCAAGGGCTTCCCTGTGCCAAGCGGAGGAGGCCCCA
GGCAGTACCTGGGTTTTGCACTGTTTCTCCCGAGTTCGTGAGAGGGGCCCCAGGGTGCTG
GTGCAGGACAGCTCATTTCAGTGGCGGTGGGGTGGGGTGCCACAGTGTGCCCTCACTCGC
TCTGGCAAAGCCTAGAAGGTAGTTGGCACTGCCTGGTCCCCTTCGATCTCTGGGTGCGGC
AGCTGGAGTCCATGGGGATGGCCTGACACCCAGCCCCACCCCTTCCAGTGACCCGGTCAG
AGCCATCGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACACTCCTTGGGGCCTAGGGCCCAGGCGAGGTGGCACTCACCTTGGGCTCTGCCCCCC
TTGCCCCTCACCCGCAAGAGCCCCTGGGGCAGAGGTAGGGTGGGGGCAAGGACAGGTGCT
GGGCAGAGCCGAGACCTCCAGCCTCGAGTTCCAGAACCGATGGGAAACCTGCAGATTGCC
TTTGCTCTGTTCGCTGCCCCCTCTCTCCTGCCTCTCCTCAGGTCCTGCTCAGCAGTGAGA
GAAAAAAGGCCAAGAGGTTTGGCTCCTGCCCACTGGTAGTCCCTGTCCCCGCAGTGTTTG
CGTGTCAAGTGACAAAGCTGTTCTTCCTGGTGACCCTGATTCTCTGCAGTATCTTGTAGA
CTATACGCATAGGCCTGCTTGGTCTCTTCTGTCCTGGGCTTTTGTTTTGCTTTTTAGTTT
TGCTTTTAGTTCTGTCCCTTTTATTTAATGCACCGAGTAGACACACAGAGCGGTTGAAGT
TTTATATCTATATATATCTGTATATTGCACAGTTATAAACTCATTTTGCTTGTGGCTCCA
CACACAAAAAAAGACCTGTTAAAATTATACCTGTTGCTTAATTACAATATTTCTGATAAC
CATAGCATAGGACAAGGGAAAATAAAAAAAAAAAAGACCAAAAAAACAAAAAAAAAAAAA
CAAACAAATGAAAAAAAAAAACGACAAATCTGTCTGCTGGTCACTTCTTCTGTCCAAGCA
AATCCGTGGTCTTTCCTCGCTTTTTCAAGGGCTTCCCTGTGCCAAGCGGAGGAGGCCCCA
GGCAGTACCTGGGTTTTGCACTGTTTCTCCCGAGTTCGTGAGAGGGGCCCCAGGGTGCTG
GTGCAGGACAGCTCATTTCAGTGGCGGTGGGGTGGGGTGCCACAGTGTGCCCTCACTCGC
TCTGGCAAAGCCTAGAAGGTAGTTGGCACTGCCTGGTCCCCTTCGATCTCTGGGTGCGGC
AGCTGGAGTCCATGGGGATGGCCTGACACCCAGCCCCACCCCTTCCAGTGACCCGGTCAG
AGCCATCGCCAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               176-555, gnl|bosTau2|chr7 (6406395-6406015)
               

               
               176-555, gnl|Hg17|chrX (152811511-152811137)
               

               
               176-555, gnl|Mm7|chrX (69416902-69416524)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               176-555, gnl|bosTau2|chr7 (6406395-6406015)
               

               
               176-555, gnl|Hg17|chrX (152811511-152811137)
               

               
               176-555, gnl|Mm7|chrX (69416902-69416524)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               cst (0.140036)
               

               
               cbr (0.127975)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               cbr (0.127975)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	176-555, gnl\|bosTau2\|chr7 (6406395-6406015)
	176-555, gnl\|Hg17\|chrX (152811511-152811137)
	176-555, gnl\|Mm7\|chrX (69416902-69416524)