Non-Coding RNA Search

Ss1.1-rpgl30_j13.5

Sequence:


               
               GCTGAAGGCTCACAGCTGCATCCCTCCCTTGGAGTTGCACTTGACTGAAGGAAAATGCTT
CATCCAGGGTTATGCCCTCATCTCCAGGAACAGCCTGCATCCAATGACCGGCTGATTCCA
AAAGTCCAACCCCCTTGCTACGACTGTGGACTTCTCTAAAAGGCCATCTCAGCTTCAGAG
CTCCCTGGGACATTGGCTAAGGCCACGGTTGCAACTGTATGTATGACTGTTAAATTTGTG
CAGTGTCCTGGTTCTCCAGCTCCCTCACAAGTGTTGATGATTCCCTGGTAAGCCTCCAAA
TGCAAATCTCAGATTCAGTACCTGTTTTACAAGGAACTCAATTTGCAACATGAGGAAACT
AGCCAGGCTCCTCAATTTTCCAGTCTGTTGCACCCGCTCCACATGACCATCAAACCCTTA
CTGTGTTGGGTTTTTTTTTGTTTTTTGTTTTTTGTTTTTCCCTCAGTAGAGACCCTCTGC
AAGAACCAAGCCTGATCTTCAGTCCAGGTCCAGAATCAGTAAATGCCCCCAGCAAACAAA
ATGGCCATTCACTCGCCTCAGGAGAGCCCCCGCCTCTCTGGGATTCCTATTCACCTAGTC
CTTGCTGCTTTCACAGCTCTCACATGTCTTTAAACATGTGATCTTTGTAATTTATCCCTA
TTTTTCTGATTGTGGCAGGGAGAGTGTTGGGCTGCCAGGACCTACTATATCCTATCTAGA
AGTGGAAGTCTCTAGATTTTCAAAATTTCAAATAATACTATTAACTTTTTTCTAACTGAA
TTGTAGGCAGAAATTACTCAAATATTTTAAAACTTGCTTAAATTATGTATGATCTAATAT
ATAATCAAATTTAATAAAATATTTAATGCACTCTTAAAAAGTATATGTATTCTCACTGTT
GGATGCAATGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGAAGGCTCACAGCTGCATCCCTCCCTTGGAGTTGCACTTGACTGAAGGAAAATGCTT
CATCCAGGGTTATGCCCTCATCTCCAGGAACAGCCTGCATCCAATGACCGGCTGATTCCA
AAAGTCCAACCCCCTTGCTACGACTGTGGACTTCTCTAAAAGGCCATCTCAGCTTCAGAG
CTCCCTGGGACATTGGCTAAGGCCACGGTTGCAACTGTATGTATGACTGTTAAATTTGTG
CAGTGTCCTGGTTCTCCAGCTCCCTCACAAGTGTTGATGATTCCCTGGTAAGCCTCCAAA
TGCAAATCTCAGATTCAGTACCTGTTTTACAAGGAACTCAATTTGCAACATGAGGAAACT
AGCCAGGCTCCTCAATTTTCCAGTCTGTTGCACCCGCTCCACATGACCATCAAACCCTTA
CTGTGTTGGGTTTTTTTTTGTTTTTTGTTTTTTGTTTTTCCCTCAGTAGAGACCCTCTGC
AAGAACCAAGCCTGATCTTCAGTCCAGGTCCAGAATCAGTAAATGCCCCCAGCAAACAAA
ATGGCCATTCACTCGCCTCAGGAGAGCCCCCGCCTCTCTGGGATTCCTATTCACCTAGTC
CTTGCTGCTTTCACAGCTCTCACATGTCTTTAAACATGTGATCTTTGTAATTTATCCCTA
TTTTTCTGATTGTGGCAGGGAGAGTGTTGGGCTGCCAGGACCTACTATATCCTATCTAGA
AGTGGAAGTCTCTAGATTTTCAAAATTTCAAATAATACTATTAACTTTTTTCTAACTGAA
TTGTAGGCAGAAATTACTCAAATATTTTAAAACTTGCTTAAATTATGTATGATCTAATAT
ATAATCAAATTTAATAAAATATTTAATGCACTCTTAAAAAGTATATGTATTCTCACTGTT
GGATGCAATGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               557-674, - strand, RNAz p=0.985169

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               557-674, - strand, RNAz p=0.985169

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               573-667, DB297601 BRACE2 Homo sapiens cDNA clone BRACE2023743 3', mRNA 
(dbj|DB297601.1|), blast E-value=0.000000000002, identity=86.32% 
               

               
               573-667, DB317322 FEBRA2 Homo sapiens cDNA clone FEBRA2013905 3', mRNA 
(dbj|DB317322.1|), blast E-value=0.000000000002, identity=86.32%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               573-667, DB297601 BRACE2 Homo sapiens cDNA clone BRACE2023743 3', mRNA 
(dbj|DB297601.1|), blast E-value=0.000000000002, identity=86.32% 
               

               
               573-667, DB317322 FEBRA2 Homo sapiens cDNA clone FEBRA2013905 3', mRNA 
(dbj|DB317322.1|), blast E-value=0.000000000002, identity=86.32%

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               19-434, gnl|bosTau2|chr29 (5506576-5506173)
               

               
               19-434, gnl|Hg17|chr11 (85824656-85824215)
               


               
               451-910, gnl|bosTau2|chr29 (5506181-5505708)
               

               
               451-910, gnl|Hg17|chr11 (85824223-85823748)
               

               
               451-910, gnl|Mm7|chr7 (85801744-85802338)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-434, gnl|bosTau2|chr29 (5506576-5506173)
               

               
               19-434, gnl|Hg17|chr11 (85824656-85824215)
               


               
               451-910, gnl|bosTau2|chr29 (5506181-5505708)
               

               
               451-910, gnl|Hg17|chr11 (85824223-85823748)
               

               
               451-910, gnl|Mm7|chr7 (85801744-85802338)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hlv (0.139256)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	573-667, DB297601 BRACE2 Homo sapiens cDNA clone BRACE2023743 3', mRNA (dbj\|DB297601.1\|), blast E-value=0.000000000002, identity=86.32%
	573-667, DB317322 FEBRA2 Homo sapiens cDNA clone FEBRA2013905 3', mRNA (dbj\|DB317322.1\|), blast E-value=0.000000000002, identity=86.32%

	19-434, gnl\|bosTau2\|chr29 (5506576-5506173)
	19-434, gnl\|Hg17\|chr11 (85824656-85824215)

	451-910, gnl\|bosTau2\|chr29 (5506181-5505708)
	451-910, gnl\|Hg17\|chr11 (85824223-85823748)
	451-910, gnl\|Mm7\|chr7 (85801744-85802338)