Non-Coding RNA Search

Ss1.1-rpgl31_n23.5

Sequence:


               
               TCTGATTGGCCACTGCTGTCCTGCAGATGGTCTTATAAAAGAGACAGTGAGAACTGGATC
CCAGCTTCGATGTCTGGCCAACAACAGCACCACTGAAGGCAGGCTGTTCCTTTGGTTCAA
TAAATCTAGAAGCTTTTCTTTGGTATCTAAATCCTCCCTCCTCTTGTAGGATTCAGGCTT
TCAGAACCTGTGGCTGTGTTGGAATTTCTCCTGATGGATGCAGATAGCTAGCTTCTGAGC
TCCAGCCTAAAGTTTTCTGTAGCATCAACAATACCCCAGGCATCTGCTTTTCCAGGGAAC
AGCTTTCTTTTGTGACAAAAGCCACAGAAGGTCTTTAGATTATTCTAGAGTCAGATGGAA
AAAGTACATACCTGCTGACTTCTTTATTCTGATCTTGAAAGTGAGTTCCCCCAGAGCAAC
CTCAAACTCCACTGATTTAGTCATAATGCTTCAGCAGATCGTCCCTGTGTCCTGCCAGGA
ACTCATGAGCTATGCTATCGGGGTCACCTGATGCTCCCTAAACAGCTTAGACACATTAGA
TACTGTTTAATAGCTCTGCTGAGATGTAATTCAAATACCATACGATTCGCTCATTTAAAA
TGTACAATTTGGGGAGTTCCCCTTGTGGCTCAGTGGGTTAGGAACCAACTAGTATCCATG
AGGTGCGGGTTTGATCCCTGGTCTCACTCAGTGGGTTAAGTATCTAGCGTGGCTGTGGCT
GTGGCGTAGGCCAGCAGCTGCAGCTCTGATTCAACCCCTAGCTGCCTGGGAACTTCCATT
TGCTGCAAGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGATTGGCCACTGCTGTCCTGCAGATGGTCTTATAAAAGAGACAGTGAGAACTGGATC
CCAGCTTCGATGTCTGGCCAACAACAGCACCACTGAAGGCAGGCTGTTCCTTTGGTTCAA
TAAATCTAGAAGCTTTTCTTTGGTATCTAAATCCTCCCTCCTCTTGTAGGATTCAGGCTT
TCAGAACCTGTGGCTGTGTTGGAATTTCTCCTGATGGATGCAGATAGCTAGCTTCTGAGC
TCCAGCCTAAAGTTTTCTGTAGCATCAACAATACCCCAGGCATCTGCTTTTCCAGGGAAC
AGCTTTCTTTTGTGACAAAAGCCACAGAAGGTCTTTAGATTATTCTAGAGTCAGATGGAA
AAAGTACATACCTGCTGACTTCTTTATTCTGATCTTGAAAGTGAGTTCCCCCAGAGCAAC
CTCAAACTCCACTGATTTAGTCATAATGCTTCAGCAGATCGTCCCTGTGTCCTGCCAGGA
ACTCATGAGCTATGCTATCGGGGTCACCTGATGCTCCCTAAACAGCTTAGACACATTAGA
TACTGTTTAATAGCTCTGCTGAGATGTAATTCAAATACCATACGATTCGCTCATTTAAAA
TGTACAATTTGGGGAGTTCCCCTTGTGGCTCAGTGGGTTAGGAACCAACTAGTATCCATG
AGGTGCGGGTTTGATCCCTGGTCTCACTCAGTGGGTTAAGTATCTAGCGTGGCTGTGGCT
GTGGCGTAGGCCAGCAGCTGCAGCTCTGATTCAACCCCTAGCTGCCTGGGAACTTCCATT
TGCTGCAAGTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               228-346, - strand, RNAz p=0.969598

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               228-346, - strand, RNAz p=0.969598

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               3-460, gnl|bosTau2|chr3 (31173179-31173637)
               

               
               3-460, gnl|canFam2|chr6 (45671400-45670905)
               

               
               3-460, gnl|dasNov1|scaffold_223683 (217-644)
               

               
               3-460, gnl|echTel1|scaffold_319338 (133890-133474)
               

               
               3-460, gnl|hg17|chr1 (109459879-109460347)
               

               
               3-460, gnl|Hg17|chr1 (109460007-109460429)
               

               
               3-460, gnl|mm7|chr3 (108275249-108274826)
               

               
               3-460, gnl|Mm7|chr3 (108275140-108274703)
               

               
               3-460, gnl|panTro1|chr1 (108383155-108383623)
               

               
               3-460, gnl|rn3|chr2 (203983234-203982828)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-460, gnl|bosTau2|chr3 (31173179-31173637)
               

               
               3-460, gnl|canFam2|chr6 (45671400-45670905)
               

               
               3-460, gnl|dasNov1|scaffold_223683 (217-644)
               

               
               3-460, gnl|echTel1|scaffold_319338 (133890-133474)
               

               
               3-460, gnl|hg17|chr1 (109459879-109460347)
               

               
               3-460, gnl|Hg17|chr1 (109460007-109460429)
               

               
               3-460, gnl|mm7|chr3 (108275249-108274826)
               

               
               3-460, gnl|Mm7|chr3 (108275140-108274703)
               

               
               3-460, gnl|panTro1|chr1 (108383155-108383623)
               

               
               3-460, gnl|rn3|chr2 (203983234-203982828)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)

	3-460, gnl\|bosTau2\|chr3 (31173179-31173637)
	3-460, gnl\|canFam2\|chr6 (45671400-45670905)
	3-460, gnl\|dasNov1\|scaffold_223683 (217-644)
	3-460, gnl\|echTel1\|scaffold_319338 (133890-133474)
	3-460, gnl\|hg17\|chr1 (109459879-109460347)
	3-460, gnl\|Hg17\|chr1 (109460007-109460429)
	3-460, gnl\|mm7\|chr3 (108275249-108274826)
	3-460, gnl\|Mm7\|chr3 (108275140-108274703)
	3-460, gnl\|panTro1\|chr1 (108383155-108383623)
	3-460, gnl\|rn3\|chr2 (203983234-203982828)

	fty (0.17584)
	mcp (0.170648)
	spl (0.143184)
	ute (0.132784)
	pgl (0.118483)