Ss1.1-rpgl31_n7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGACCTGCCTAAGCCGCGGCAGGCATAGGACACCATGAAGCAGCTGCCAGTCTTGGAGC CTGGAGACAAGCCCAGGAAGGCAACATGGTACACCTTGACCCCGACTGGAGACAGCCCCT GTGCTCGGGTTGGCCACAGCTGCTCATATTTACCCCCTGTTGGTGACTCCAAGAGAGGGA AGGTCTTCATTGTTGGGGGAGCAAATCCAAACAGGAGCTTCTCAGATGTGCACACGATGG ATCTGGGAACACACCAGTGGGATTTAACCACCTCAGAGGGCCTCTTGCCCCGGTACGAAC ACGCCAGCTTCGTTCCCTCCTGCGCACCTCACAGCATCTGGGTGTTTGGAGGTGCCGACC AGTCAGGAAATCGAAATTGCCTACAAGTTCTGAATCCTGAAACCAGGACTTGGACCATGC CAGAGGTGACCAGCCCACCCCCATCACCAAGAACATTCCATACATCATCATCAGTGATTG GAAACCAGCTGTATGTCTTTGGGGGCGGAGAGAGAGGTGCCCAGCCTGTGCAGGATGTGA AGCTGCACGTGTTTGATGCAAACACCCTGACCTGGTCACAACCAGAGACACTTGGAGAAC CTCCATCCCCCCGGCATGGTCATGTGATGGTGGCAGCAGGGACAAAGCTCTTCATCCATG GAGGCTTGGCAGGGGACAAGTTCTATGATGATCTCCATTGCATTGATATCAATGACATGA AATGGCAGAAGCTAAGTCCCACAGGGGCAGCTCCCACAGGCTGTGCTGCCCACTCAGCTG TGACCGTGGGGAAACACGTGTATATCTTTGGAGGGATGACCCCCACTGGAGCACTCGACA CAATGTACCAATATCATATAGAAAAGCAGCATTGGACCTTGCTTAAATTTGATAGTTTTC TACCCCCTGGACGATTGGACCATGCCATGTGCATCATTCCATGGGCAGAGAGGTGTACTT CCGAGAAAAATTCAAATTCTGCTGTGCTAAACTGTGATGCTGAGAAGGGGAATTCCACTG AGAAAGGAGTAACCCAAGACGATGACTCACAAGAAAGGCAGTCGGACACATTGCTCTGTT TTGTGTTTGGTGGGATGAATACAGAAGGGGAAATCTATAATGATTGTATTGTGACTGTAG TTGACTAATAAAACGCACATTTTTATTAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGACCTGCCTAAGCCGCGGCAGGCATAGGACACCATGAAGCAGCTGCCAGTCTTGGAGC CTGGAGACAAGCCCAGGAAGGCAACATGGTACACCTTGACCCCGACTGGAGACAGCCCCT GTGCTCGGGTTGGCCACAGCTGCTCATATTTACCCCCTGTTGGTGACTCCAAGAGAGGGA AGGTCTTCATTGTTGGGGGAGCAAATCCAAACAGGAGCTTCTCAGATGTGCACACGATGG ATCTGGGAACACACCAGTGGGATTTAACCACCTCAGAGGGCCTCTTGCCCCGGTACGAAC ACGCCAGCTTCGTTCCCTCCTGCGCACCTCACAGCATCTGGGTGTTTGGAGGTGCCGACC AGTCAGGAAATCGAAATTGCCTACAAGTTCTGAATCCTGAAACCAGGACTTGGACCATGC CAGAGGTGACCAGCCCACCCCCATCACCAAGAACATTCCATACATCATCATCAGTGATTG GAAACCAGCTGTATGTCTTTGGGGGCGGAGAGAGAGGTGCCCAGCCTGTGCAGGATGTGA AGCTGCACGTGTTTGATGCAAACACCCTGACCTGGTCACAACCAGAGACACTTGGAGAAC CTCCATCCCCCCGGCATGGTCATGTGATGGTGGCAGCAGGGACAAAGCTCTTCATCCATG GAGGCTTGGCAGGGGACAAGTTCTATGATGATCTCCATTGCATTGATATCAATGACATGA AATGGCAGAAGCTAAGTCCCACAGGGGCAGCTCCCACAGGCTGTGCTGCCCACTCAGCTG TGACCGTGGGGAAACACGTGTATATCTTTGGAGGGATGACCCCCACTGGAGCACTCGACA CAATGTACCAATATCATATAGAAAAGCAGCATTGGACCTTGCTTAAATTTGATAGTTTTC TACCCCCTGGACGATTGGACCATGCCATGTGCATCATTCCATGGGCAGAGAGGTGTACTT CCGAGAAAAATTCAAATTCTGCTGTGCTAAACTGTGATGCTGAGAAGGGGAATTCCACTG AGAAAGGAGTAACCCAAGACGATGACTCACAAGAAAGGCAGTCGGACACATTGCTCTGTT TTGTGTTTGGTGGGATGAATACAGAAGGGGAAATCTATAATGATTGTATTGTGACTGTAG TTGACTAATAAAACGCACATTTTTATTAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 242-399, gnl|bosTau2|chr11 (77065272-77065429) | |
| 242-399, gnl|Hg17|chr9 (125055198-125055355) | |
| 242-399, gnl|Mm7|chr2 (34797971-34797814) | |
| 559-711, gnl|bosTau2|chr11 (77072493-77072645) | |
| 559-711, gnl|canFam2|chr9 (61202295-61202127) | |
| 559-711, gnl|danRer3|chr13 (641368-641201) | |
| 559-711, gnl|dasNov1|scaffold_60491 (4800-4632) | |
| 559-711, gnl|echTel1|scaffold_227494 (6787-6955) | |
| 559-711, gnl|fr1|chrUn (167643077-167642921) | |
| 559-711, gnl|galGal2|chr17 (860945-860784) | |
| 559-711, gnl|hg17|chr9 (125069729-125069898) | |
| 559-711, gnl|Hg17|chr9 (125069740-125069892) | |
| 559-711, gnl|loxAfr1|scaffold_14019 (12179-12011) | |
| 559-711, gnl|mm7|chr2 (34792022-34791854) | |
| 559-711, gnl|Mm7|chr2 (34792009-34791857) | |
| 559-711, gnl|monDom2|scaffold_38 (19387959-19388127) | |
| 559-711, gnl|oryCun1|scaffold_148940 (5040-4872) | |
| 559-711, gnl|panTro1|chr11 (109863366-109863535) | |
| 559-711, gnl|rheMac2|chr17 (51750032-51750187) | |
| 559-711, gnl|rn3|chr3 (13692731-13692563) | |
| 559-711, gnl|tetNig1|chr4 (5133317-5133473) | |
| 858-1165, gnl|bosTau2|chr11 (77074984-77075297) | |
| 858-1165, gnl|Hg17|chr9 (125075517-125075830) | |
| 858-1165, gnl|Mm7|chr2 (34786844-34786531) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 242-399, gnl|bosTau2|chr11 (77065272-77065429) | |
| 242-399, gnl|Hg17|chr9 (125055198-125055355) | |
| 242-399, gnl|Mm7|chr2 (34797971-34797814) | |
| 559-711, gnl|bosTau2|chr11 (77072493-77072645) | |
| 559-711, gnl|canFam2|chr9 (61202295-61202127) | |
| 559-711, gnl|danRer3|chr13 (641368-641201) | |
| 559-711, gnl|dasNov1|scaffold_60491 (4800-4632) | |
| 559-711, gnl|echTel1|scaffold_227494 (6787-6955) | |
| 559-711, gnl|fr1|chrUn (167643077-167642921) | |
| 559-711, gnl|galGal2|chr17 (860945-860784) | |
| 559-711, gnl|hg17|chr9 (125069729-125069898) | |
| 559-711, gnl|Hg17|chr9 (125069740-125069892) | |
| 559-711, gnl|loxAfr1|scaffold_14019 (12179-12011) | |
| 559-711, gnl|mm7|chr2 (34792022-34791854) | |
| 559-711, gnl|Mm7|chr2 (34792009-34791857) | |
| 559-711, gnl|monDom2|scaffold_38 (19387959-19388127) | |
| 559-711, gnl|oryCun1|scaffold_148940 (5040-4872) | |
| 559-711, gnl|panTro1|chr11 (109863366-109863535) | |
| 559-711, gnl|rheMac2|chr17 (51750032-51750187) | |
| 559-711, gnl|rn3|chr3 (13692731-13692563) | |
| 559-711, gnl|tetNig1|chr4 (5133317-5133473) | |
| 858-1165, gnl|bosTau2|chr11 (77074984-77075297) | |
| 858-1165, gnl|Hg17|chr9 (125075517-125075830) | |
| 858-1165, gnl|Mm7|chr2 (34786844-34786531) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cte (0.58548) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| fcc (0.197785) | |
| mga (0.160205) | |
| csk (0.140746) | |
| cov (0.132153) | |
| ret (0.128733) | |
| spc (0.113366) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.58548) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| fcc (0.197785) | |
| mga (0.160205) | |
| csk (0.140746) | |
| cov (0.132153) | |
| ret (0.128733) | |
| spc (0.113366) |