Non-Coding RNA Search

Ss1.1-rpgl32_d8.5

Sequence:


               
               GGCCTTCCAGGCAAGATGGATCGGCCCACAGCAGCTACAGGGCACACGGTGACCATCTGT
GTGCTCCTGCTCTTCATCCTCATGTTCATCTTCTGCTCCTTCATTATCTTTGGTTCCGAC
TACATTTCGGAGCAGAGCTGGTGGGCCATCCTTCTGGTCATTCTAATGGTGCTGCTGATC
AGTGCCCTGGTATTTGTGATCCTACAGCAGCCAGAGAACCCCAAGAAGCTGCCCTATATG
GCTCCCTGCCTCCCCTTTGTGCCTGCCTTTGCCATGCTGGTGAACATCTATCTCATGCTA
AAGCTCTCCACCATCACCTGGATCCGGTTTGCGGTCTGGTGCTTTGTGGGTATGCTCATT
TATTTTGGGTATGGCATCTGGAACAGCACCCTGGAAATCAGTGCCCGAGAAGAAGCCCTG
CACCAAAGCATGTACCAGCGCTACGACGTGGATGACCCCTTCTCAGTGGAGGAGGGTTTC
TCCTATGCCACTGAGGGTGAGAGCCAGGAGAACTGGGGCGGGCCGGCTGAAGACAAAGGC
TTCTATTACCAGCAGATGTCAGATGCGCAGGCAAACACCCGGACCAGCAGCAAAGCGAAG
AGCAAAAGCAAACACAAACAGAACTCAGAGGCCCTGATTGCAAACGATGAGTTAGATTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTTCCAGGCAAGATGGATCGGCCCACAGCAGCTACAGGGCACACGGTGACCATCTGT
GTGCTCCTGCTCTTCATCCTCATGTTCATCTTCTGCTCCTTCATTATCTTTGGTTCCGAC
TACATTTCGGAGCAGAGCTGGTGGGCCATCCTTCTGGTCATTCTAATGGTGCTGCTGATC
AGTGCCCTGGTATTTGTGATCCTACAGCAGCCAGAGAACCCCAAGAAGCTGCCCTATATG
GCTCCCTGCCTCCCCTTTGTGCCTGCCTTTGCCATGCTGGTGAACATCTATCTCATGCTA
AAGCTCTCCACCATCACCTGGATCCGGTTTGCGGTCTGGTGCTTTGTGGGTATGCTCATT
TATTTTGGGTATGGCATCTGGAACAGCACCCTGGAAATCAGTGCCCGAGAAGAAGCCCTG
CACCAAAGCATGTACCAGCGCTACGACGTGGATGACCCCTTCTCAGTGGAGGAGGGTTTC
TCCTATGCCACTGAGGGTGAGAGCCAGGAGAACTGGGGCGGGCCGGCTGAAGACAAAGGC
TTCTATTACCAGCAGATGTCAGATGCGCAGGCAAACACCCGGACCAGCAGCAAAGCGAAG
AGCAAAAGCAAACACAAACAGAACTCAGAGGCCCTGATTGCAAACGATGAGTTAGATTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61880999|ref|XP_618455.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61880999|ref|XP_618455.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-239, + strand, RNAz p=0.848702

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-239, + strand, RNAz p=0.848702

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-355, gnl|bosTau2|chr1 (62590391-62590745)
               

               
               1-355, gnl|Hg17|chr3 (171681128-171680774)
               

               
               1-355, gnl|Mm7|chr3 (31035816-31035462)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-355, gnl|bosTau2|chr1 (62590391-62590745)
               

               
               1-355, gnl|Hg17|chr3 (171681128-171680774)
               

               
               1-355, gnl|Mm7|chr3 (31035816-31035462)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-355, gnl\|bosTau2\|chr1 (62590391-62590745)
	1-355, gnl\|Hg17\|chr3 (171681128-171680774)
	1-355, gnl\|Mm7\|chr3 (31035816-31035462)