Ss1.1-rpgl33_b16.5
|
CCCCGCCGCTGCGACTTACACAGGCAGGCGGGAATAAAGCGGGGGCGAAGGGAAGGTGAT
ACGTGGATGTTTAAGCATTATCCTTTAACAAACAGAAAATGGATGAAAATAAAGATCCTG
ATTCAAAAGACAGTGGAGAATATGAAGATGATTTTGAAAAGGACCTGGAATGGTTAATTA
ATGAAAAAGAAAAAAGTGGCGCCAGCATAGTAGAGATGGCTGGTGGGAATGAAGAGAATA
TTAACCAAGACTTAAAACAGAATGAAACAGAAATAGAACACACTGAACAGCTTTCTGATC
CTAACAAATCTTTGAAGGATGAGGGTTCATTAAGAAGAAATGACTTCATTTCTGTACCAA
GTTTCCAACCTCTGGATCCCATATCAGATTCAGACAGTGAAAACTCCTTACAGGAATCCA
AACTGGAAAGCCAGCAAGACCTGGAGGAAGAAGAGGATGAGGAAGTAAGGAGATACATTA
TGGAAAAAATTATACAGGCCAACAAACTTCTACAAAATGAAGAACCTGTGAATGATAAAA
GGGAACGGAAACTTAAGTTCAAGGACAAATTAGTTGATTTGGAAGTTCCTCCTCTGGAAG
ACACTGATACAGGCAAAAATCATTTTGAAAATGAAAGTAATGTGTCTGGAAAACTGTCAC
AATTATGTATTTCCAATGAATTTGGACAAGAAAATGTGCTCCTATCACTTACTGATGCAA
GGTGTGAAGAAAACAAGGATAGGAAAATACTGGTAGAGAGAGATGGAAAATTTGAACTTC
TGAATTTACAAGACATTGAGAGTCAGGGGTTTTTGCCCCCCATTAATAATGCTGATAGTA
CAGTGGAAAATGAGCCTCAGCAGTTGTCACCCAGATCTTCCAATTCATCTGTCAGTGGAG
TCAAGAAAGAAGAACCAATAATGAAAATTCATGCTGTTGCTTACTCATCAACAGAAGAGC
CACTGGCTTACATCCCTCAGCCCCCACCAAACCCAAAGACTTATCCAGGCTCTGCTGCCA
ACTCAGATGGAAGTAAGGGGAATGGGAAATCTAATCATAGGACACAGTCTGCAGATGTAT
CTCCAGTGACCTCAACATACTGTCTTTCTCCTCGACAGAAAGAACTGCAAAAACGACTGG
AGCAAAAGAGAGAAAGGCTAAAGAGAGAGGAAGAACAACGGAAAATAAAAGAAGAGAAAG
AAAAGAAAAAAGAGAATGACATGGTATTTAAAGCATGGTTGCAAAAGAAGAGAGAGCAGG
TTCTAGAAATGAAGAGAATTCAGCGAGCAAAGCAAATTGAAGACATGAACAGTAGACAGG
AAGACAGAGATCCACAACTAGCTTTTCAATTATGGCTTAAAAAAAAGCATGAAGAACAGT
TGAAAGAAAGAAAGACTGAAGAACTACGAAAGCAAGAGGAGTGCTTATTTTTCCTTAAAG
GAACAGAAGGCCGTGAAAGAGCCTTTAAACAATGGCTAAGAAGGAAACGCATAGAAAAAC
TAGCAGAGCAACAAGCTGTAAAAGAAAGAACTAGACAGCTCCGACTAGAAGCAAAGCGTT
CTAAACAGTTACAGCATCACCTGTATACTATGTCAGAAGCCAAATCTTTTCGTTTTACTG
ATCATTACAACTGAAGGTATCTAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCCCGCCGCTGCGACTTACACAGGCAGGCGGGAATAAAGCGGGGGCGAAGGGAAGGTGAT
ACGTGGATGTTTAAGCATTATCCTTTAACAAACAGAAAATGGATGAAAATAAAGATCCTG
ATTCAAAAGACAGTGGAGAATATGAAGATGATTTTGAAAAGGACCTGGAATGGTTAATTA
ATGAAAAAGAAAAAAGTGGCGCCAGCATAGTAGAGATGGCTGGTGGGAATGAAGAGAATA
TTAACCAAGACTTAAAACAGAATGAAACAGAAATAGAACACACTGAACAGCTTTCTGATC
CTAACAAATCTTTGAAGGATGAGGGTTCATTAAGAAGAAATGACTTCATTTCTGTACCAA
GTTTCCAACCTCTGGATCCCATATCAGATTCAGACAGTGAAAACTCCTTACAGGAATCCA
AACTGGAAAGCCAGCAAGACCTGGAGGAAGAAGAGGATGAGGAAGTAAGGAGATACATTA
TGGAAAAAATTATACAGGCCAACAAACTTCTACAAAATGAAGAACCTGTGAATGATAAAA
GGGAACGGAAACTTAAGTTCAAGGACAAATTAGTTGATTTGGAAGTTCCTCCTCTGGAAG
ACACTGATACAGGCAAAAATCATTTTGAAAATGAAAGTAATGTGTCTGGAAAACTGTCAC
AATTATGTATTTCCAATGAATTTGGACAAGAAAATGTGCTCCTATCACTTACTGATGCAA
GGTGTGAAGAAAACAAGGATAGGAAAATACTGGTAGAGAGAGATGGAAAATTTGAACTTC
TGAATTTACAAGACATTGAGAGTCAGGGGTTTTTGCCCCCCATTAATAATGCTGATAGTA
CAGTGGAAAATGAGCCTCAGCAGTTGTCACCCAGATCTTCCAATTCATCTGTCAGTGGAG
TCAAGAAAGAAGAACCAATAATGAAAATTCATGCTGTTGCTTACTCATCAACAGAAGAGC
CACTGGCTTACATCCCTCAGCCCCCACCAAACCCAAAGACTTATCCAGGCTCTGCTGCCA
ACTCAGATGGAAGTAAGGGGAATGGGAAATCTAATCATAGGACACAGTCTGCAGATGTAT
CTCCAGTGACCTCAACATACTGTCTTTCTCCTCGACAGAAAGAACTGCAAAAACGACTGG
AGCAAAAGAGAGAAAGGCTAAAGAGAGAGGAAGAACAACGGAAAATAAAAGAAGAGAAAG
AAAAGAAAAAAGAGAATGACATGGTATTTAAAGCATGGTTGCAAAAGAAGAGAGAGCAGG
TTCTAGAAATGAAGAGAATTCAGCGAGCAAAGCAAATTGAAGACATGAACAGTAGACAGG
AAGACAGAGATCCACAACTAGCTTTTCAATTATGGCTTAAAAAAAAGCATGAAGAACAGT
TGAAAGAAAGAAAGACTGAAGAACTACGAAAGCAAGAGGAGTGCTTATTTTTCCTTAAAG
GAACAGAAGGCCGTGAAAGAGCCTTTAAACAATGGCTAAGAAGGAAACGCATAGAAAAAC
TAGCAGAGCAACAAGCTGTAAAAGAAAGAACTAGACAGCTCCGACTAGAAGCAAAGCGTT
CTAAACAGTTACAGCATCACCTGTATACTATGTCAGAAGCCAAATCTTTTCGTTTTACTG
ATCATTACAACTGAAGGTATCTAT
|
|
gi|57089017|ref|XP_537204.1| |
Protein identifier
|
gi|57089017|ref|XP_537204.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
214-1170, gnl|bosTau2|chr16 (24820202-24819249) |
|
214-1170, gnl|Hg17|chr1 (166123211-166122258) |
|
214-1170, gnl|Mm7|chr1 (164246056-164247006) |
| |
|
1472-1644, gnl|bosTau2|chr16 (24807624-24807452) |
|
1472-1644, gnl|canFam2|chr7 (32140303-32140047) |
|
1472-1644, gnl|dasNov1|scaffold_9113 (92022-92279) |
|
1472-1644, gnl|echTel1|scaffold_320157 (40345-40096) |
|
1472-1644, gnl|galGal2|chr1 (77761979-77761711) |
|
1472-1644, gnl|hg17|chr1 (166095862-166096115) |
|
1472-1644, gnl|Hg17|chr1 (166096102-166095933) |
|
1472-1644, gnl|mm7|chr1 (164254027-164253769) |
|
1472-1644, gnl|Mm7|chr1 (164253780-164253952) |
|
1472-1644, gnl|monDom2|scaffold_16 (20468551-20468818) |
|
1472-1644, gnl|panTro1|chr1 (148360426-148360679) |
|
1472-1644, gnl|rheMac2|chr1 (199100941-199101197) |
|
1472-1644, gnl|rn3|chr13 (80067928-80067671) |
|
1472-1644, gnl|xenTro1|scaffold_143 (1719366-1719588) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
214-1170, gnl|bosTau2|chr16 (24820202-24819249) |
|
214-1170, gnl|Hg17|chr1 (166123211-166122258) |
|
214-1170, gnl|Mm7|chr1 (164246056-164247006) |
| |
|
1472-1644, gnl|bosTau2|chr16 (24807624-24807452) |
|
1472-1644, gnl|canFam2|chr7 (32140303-32140047) |
|
1472-1644, gnl|dasNov1|scaffold_9113 (92022-92279) |
|
1472-1644, gnl|echTel1|scaffold_320157 (40345-40096) |
|
1472-1644, gnl|galGal2|chr1 (77761979-77761711) |
|
1472-1644, gnl|hg17|chr1 (166095862-166096115) |
|
1472-1644, gnl|Hg17|chr1 (166096102-166095933) |
|
1472-1644, gnl|mm7|chr1 (164254027-164253769) |
|
1472-1644, gnl|Mm7|chr1 (164253780-164253952) |
|
1472-1644, gnl|monDom2|scaffold_16 (20468551-20468818) |
|
1472-1644, gnl|panTro1|chr1 (148360426-148360679) |
|
1472-1644, gnl|rheMac2|chr1 (199100941-199101197) |
|
1472-1644, gnl|rn3|chr13 (80067928-80067671) |
|
1472-1644, gnl|xenTro1|scaffold_143 (1719366-1719588) |
|
tra (0.246184) |
|
tes (0.207814) |
|
cmu (0.186393) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
kid (0.129735) |
|
ret (0.128733) |
|
thg (0.126791) |
|
pgl (0.118483) |
|
tra (0.246184) |
|
tes (0.207814) |
|
cmu (0.186393) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
kid (0.129735) |
|
ret (0.128733) |
|
thg (0.126791) |
|
pgl (0.118483) |
