Non-Coding RNA Search

Ss1.1-rpgl35_k3.5

Sequence:


               
               AAAACATGGAACTGATGGAGAAGAAACTCACGGACTACATCGATCAGCGAATTTATAAGC
TCCAGGAGCACCTAGATAATAAGATGCTTTGTTGGTGGACTTGCTGCAAAATCCCAACTC
CCCACCCTCTGGGATGCCTCTAAGACATTATGACTCTGGAGAAAGACTTTCAAATGGAGA
AAGATAAGCACTCAACACATACAGAGTACTACAGATATTTATTAAGTATTTATTACAAAG
CCAAAACATCAAAGCAGCTATTTAACGTCATTTGAGGGTCACTGTTGACTTATATAAAGT
GACCTCAGGATCTTATCACGTTAACGCTTAGTACACAGTACTGGATTTATAATAATGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACATGGAACTGATGGAGAAGAAACTCACGGACTACATCGATCAGCGAATTTATAAGC
TCCAGGAGCACCTAGATAATAAGATGCTTTGTTGGTGGACTTGCTGCAAAATCCCAACTC
CCCACCCTCTGGGATGCCTCTAAGACATTATGACTCTGGAGAAAGACTTTCAAATGGAGA
AAGATAAGCACTCAACACATACAGAGTACTACAGATATTTATTAAGTATTTATTACAAAG
CCAAAACATCAAAGCAGCTATTTAACGTCATTTGAGGGTCACTGTTGACTTATATAAAGT
GACCTCAGGATCTTATCACGTTAACGCTTAGTACACAGTACTGGATTTATAATAATGGTA

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-264, gnl|bosTau2|chr26 (28032028-28032291)
               

               
               1-264, gnl|canFam2|chr28 (35497585-35497884)
               

               
               1-264, gnl|dasNov1|scaffold_117309 (3456-3157)
               

               
               1-264, gnl|echTel1|scaffold_49039 (668-372)
               

               
               1-264, gnl|galGal2|chrUn (12055690-12055417)
               

               
               1-264, gnl|hg17|chr10 (124647296-124647595)
               

               
               1-264, gnl|Hg17|chr10 (124647346-124647606)
               

               
               1-264, gnl|loxAfr1|scaffold_17888 (28682-28980)
               

               
               1-264, gnl|mm7|chr7 (127697922-127697626)
               

               
               1-264, gnl|Mm7|chr7 (127697870-127697614)
               

               
               1-264, gnl|monDom2|scaffold_14 (36062027-36062326)
               

               
               1-264, gnl|oryCun1|scaffold_140937 (8113-8413)
               

               
               1-264, gnl|panTro1|chr8 (126987136-126986837)
               

               
               1-264, gnl|rheMac2|chr9 (122531393-122531094)
               

               
               1-264, gnl|rn3|chr1 (191081857-191081562)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-264, gnl|bosTau2|chr26 (28032028-28032291)
               

               
               1-264, gnl|canFam2|chr28 (35497585-35497884)
               

               
               1-264, gnl|dasNov1|scaffold_117309 (3456-3157)
               

               
               1-264, gnl|echTel1|scaffold_49039 (668-372)
               

               
               1-264, gnl|galGal2|chrUn (12055690-12055417)
               

               
               1-264, gnl|hg17|chr10 (124647296-124647595)
               

               
               1-264, gnl|Hg17|chr10 (124647346-124647606)
               

               
               1-264, gnl|loxAfr1|scaffold_17888 (28682-28980)
               

               
               1-264, gnl|mm7|chr7 (127697922-127697626)
               

               
               1-264, gnl|Mm7|chr7 (127697870-127697614)
               

               
               1-264, gnl|monDom2|scaffold_14 (36062027-36062326)
               

               
               1-264, gnl|oryCun1|scaffold_140937 (8113-8413)
               

               
               1-264, gnl|panTro1|chr8 (126987136-126986837)
               

               
               1-264, gnl|rheMac2|chr9 (122531393-122531094)
               

               
               1-264, gnl|rn3|chr1 (191081857-191081562)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               pgl (0.118483)

	1-264, gnl\|bosTau2\|chr26 (28032028-28032291)
	1-264, gnl\|canFam2\|chr28 (35497585-35497884)
	1-264, gnl\|dasNov1\|scaffold_117309 (3456-3157)
	1-264, gnl\|echTel1\|scaffold_49039 (668-372)
	1-264, gnl\|galGal2\|chrUn (12055690-12055417)
	1-264, gnl\|hg17\|chr10 (124647296-124647595)
	1-264, gnl\|Hg17\|chr10 (124647346-124647606)
	1-264, gnl\|loxAfr1\|scaffold_17888 (28682-28980)
	1-264, gnl\|mm7\|chr7 (127697922-127697626)
	1-264, gnl\|Mm7\|chr7 (127697870-127697614)
	1-264, gnl\|monDom2\|scaffold_14 (36062027-36062326)
	1-264, gnl\|oryCun1\|scaffold_140937 (8113-8413)
	1-264, gnl\|panTro1\|chr8 (126987136-126986837)
	1-264, gnl\|rheMac2\|chr9 (122531393-122531094)
	1-264, gnl\|rn3\|chr1 (191081857-191081562)