Non-Coding RNA Search

Ss1.1-rpigca0_000223.5

Sequence:


               
               TGAGGAGGGTCCCCTTCCCAGTAGGCTCTCTTAACAGTACCCACCTGTTGGGTGAAGTGG
GGAAAGTATAGAAAGTGCTTAGCAACTTTTCTGTTGGTATGTTGCTAATTGTTGTCCCAA
AAAACACATGTACACCTGCAGGGGAAATGCAGGCCCTCTGGACTTGTCTTAAGGGTGTTT
GAACTGTCTCTCACAATCTCATTTCTTGATTTTAAGAAATAAAAAGCGAATGAGTCTGCA
TTCTTTCTGGGTGGGAAATGTTGGGGAACTTGATTTCTCTTGGTGGTGCTGGGACTTGAC
AGGTTAATGACAGCCGTTCTTTTTTTCCCTCTCAGTACATCCAGCAGTGGTAATTCGACA
ACGAAAGTCATACCGGAGAAAAGATGGAGTGTTTCTATATTTTGAAGATAATGCAGGGGT
CATAGTAAATAATAAAGGCGAGATGAAAGGTAGGAAAGAATGCATGTTCTCAGTATTGTT
ATTGAAGTATAGCTGATGTACAATGTCATGTTAGTTTCTGCAGTGCAGCAGAGCGGTTCA
GATAGATATGTATGCACCGTTCTTTAGGTTTTGAGATTGGATGATTTAGCACAGGGTGTA
AGGAAAAAACCTGAGCTTACCTGTCACTTCATTTTTTAATGCAGGTTCTGCCATCACAGG
ACCAGTTGCAAAGGAATGTGCAGACTTGTGGCCCAGAATTGCATCCAATGCTGGTAGCAT
TGCGTGATTCTTCAGTGCATTTGTAAAAAGTAAATAAAAATGGCTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGAGGGTCCCCTTCCCAGTAGGCTCTCTTAACAGTACCCACCTGTTGGGTGAAGTGG
GGAAAGTATAGAAAGTGCTTAGCAACTTTTCTGTTGGTATGTTGCTAATTGTTGTCCCAA
AAAACACATGTACACCTGCAGGGGAAATGCAGGCCCTCTGGACTTGTCTTAAGGGTGTTT
GAACTGTCTCTCACAATCTCATTTCTTGATTTTAAGAAATAAAAAGCGAATGAGTCTGCA
TTCTTTCTGGGTGGGAAATGTTGGGGAACTTGATTTCTCTTGGTGGTGCTGGGACTTGAC
AGGTTAATGACAGCCGTTCTTTTTTTCCCTCTCAGTACATCCAGCAGTGGTAATTCGACA
ACGAAAGTCATACCGGAGAAAAGATGGAGTGTTTCTATATTTTGAAGATAATGCAGGGGT
CATAGTAAATAATAAAGGCGAGATGAAAGGTAGGAAAGAATGCATGTTCTCAGTATTGTT
ATTGAAGTATAGCTGATGTACAATGTCATGTTAGTTTCTGCAGTGCAGCAGAGCGGTTCA
GATAGATATGTATGCACCGTTCTTTAGGTTTTGAGATTGGATGATTTAGCACAGGGTGTA
AGGAAAAAACCTGAGCTTACCTGTCACTTCATTTTTTAATGCAGGTTCTGCCATCACAGG
ACCAGTTGCAAAGGAATGTGCAGACTTGTGGCCCAGAATTGCATCCAATGCTGGTAGCAT
TGCGTGATTCTTCAGTGCATTTGTAAAAAGTAAATAAAAATGGCTCTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q6QAQ3_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q6QAQ3_PIG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               29-180, + strand, RNAz p=0.993949

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               29-180, + strand, RNAz p=0.993949

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               29-467, gnl|bosTau2|chr19 (41595878-41596345)
               


               
               560-761, gnl|bosTau2|chr19 (41596348-41596552)
               

               
               560-761, gnl|Hg17|chr17 (34260119-34259859)
               

               
               560-761, gnl|Mm7|chr11 (97887283-97887086)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-467, gnl|bosTau2|chr19 (41595878-41596345)
               


               
               560-761, gnl|bosTau2|chr19 (41596348-41596552)
               

               
               560-761, gnl|Hg17|chr17 (34260119-34259859)
               

               
               560-761, gnl|Mm7|chr11 (97887283-97887086)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               clu (0.119646)

	29-467, gnl\|bosTau2\|chr19 (41595878-41596345)

	560-761, gnl\|bosTau2\|chr19 (41596348-41596552)
	560-761, gnl\|Hg17\|chr17 (34260119-34259859)
	560-761, gnl\|Mm7\|chr11 (97887283-97887086)