Ss1.1-rpigca0_000456.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACAGAACACAGCATATCTGGAGTCAGCGACCCCTTCCTACAGGTCCAGATACTTCGTCT GCTTCGGATTCTGGGTCAGAACCACGAGGAGAGCAGTGAGACCATGAATGACTTGCTGGC CCAGGTAGCCACAAACACGAACACCAGCCGAAATGCGGGCAGCGCAGTCCTCTTTGAGAC GGTCCTCACCATCCTGGACATTCGCTCAGCAGCAGGCCTGCGGGTTCTAGCTGTCAACAT TCTTGGCCGCTTCCTGCTCAACAGTGACAGGAACATTAGGTACGTAGCGCTGATGTCCCT GCTGCGGCTGGTGCAGTCTGACCACAGCGCTGTGCAGCGGCACCGGCCCACCGTGGTGGA CTGTCTGCGGGACCCCGATGCTTCCCTCAGCCGGCGGGCCCTGGAACTGAGCCTGGCTCT GGTGAACAGCTCCAATGTGCGAGCCATGACCCAGGAGCTGCAGGGCTTTCTGGAGTCCTG CCCCCCTGATCTGCGGGCCACCTGTGCCTCAGGCATCCTGCTGGCGGCTGAGAGGTTTGC CCCATCCAAGCGGTGGCACATAGACACCATCCTGCATGTACTGACAACGGCAGGCGCCTA TGTGCGTGATGATGCGGTAGCCAACCTGACCCAGCTGATTGGGGGTGCCCAGGAGCTCCA CGCCTACTCTGTGCGCCGCCTCTACAGCGCACTGGCCAAGGACATCTCTCAGCAACCGCT GGTGCAGGTGGCAGCCTGGTGCATTGGGGAATACGGGGACCTCCTGCTGGAGGGGAGCTG TGAGGAAGCTGAGCCCCTGCAGGTGGAGGAAGAGGAGGTGTTGGCATTGCTGGAAAGGGT GCTGCAGTCTCACATGTCCCTGCCAGCTACCCGAGGATATGCCCTGACAGCCCTCATGAA GCTCAGCACCCGGCTCCGTGGGGACAACAACCGCATCCGCCAGGTGGTGTCCATCTACGG GAGCTGCATGGACGTGGAGCTGCAGCAGCGTGCGGTGGAATACAACACTCTCTTCCGGAA GTACGACCACATGAGGGCTGCCATCCTGGAAAAGATGCCTCTTATGGAGCGAGGTGGCCC TCAGGTCGATGAGAAAGCAAAGGAAAGCGAAGAAGAAGAAGCGGCCCCTAACCCCACAGA GCCCCAGGCCTCGAAGCTCCTGGATCTCTTGGATCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACAGAACACAGCATATCTGGAGTCAGCGACCCCTTCCTACAGGTCCAGATACTTCGTCT GCTTCGGATTCTGGGTCAGAACCACGAGGAGAGCAGTGAGACCATGAATGACTTGCTGGC CCAGGTAGCCACAAACACGAACACCAGCCGAAATGCGGGCAGCGCAGTCCTCTTTGAGAC GGTCCTCACCATCCTGGACATTCGCTCAGCAGCAGGCCTGCGGGTTCTAGCTGTCAACAT TCTTGGCCGCTTCCTGCTCAACAGTGACAGGAACATTAGGTACGTAGCGCTGATGTCCCT GCTGCGGCTGGTGCAGTCTGACCACAGCGCTGTGCAGCGGCACCGGCCCACCGTGGTGGA CTGTCTGCGGGACCCCGATGCTTCCCTCAGCCGGCGGGCCCTGGAACTGAGCCTGGCTCT GGTGAACAGCTCCAATGTGCGAGCCATGACCCAGGAGCTGCAGGGCTTTCTGGAGTCCTG CCCCCCTGATCTGCGGGCCACCTGTGCCTCAGGCATCCTGCTGGCGGCTGAGAGGTTTGC CCCATCCAAGCGGTGGCACATAGACACCATCCTGCATGTACTGACAACGGCAGGCGCCTA TGTGCGTGATGATGCGGTAGCCAACCTGACCCAGCTGATTGGGGGTGCCCAGGAGCTCCA CGCCTACTCTGTGCGCCGCCTCTACAGCGCACTGGCCAAGGACATCTCTCAGCAACCGCT GGTGCAGGTGGCAGCCTGGTGCATTGGGGAATACGGGGACCTCCTGCTGGAGGGGAGCTG TGAGGAAGCTGAGCCCCTGCAGGTGGAGGAAGAGGAGGTGTTGGCATTGCTGGAAAGGGT GCTGCAGTCTCACATGTCCCTGCCAGCTACCCGAGGATATGCCCTGACAGCCCTCATGAA GCTCAGCACCCGGCTCCGTGGGGACAACAACCGCATCCGCCAGGTGGTGTCCATCTACGG GAGCTGCATGGACGTGGAGCTGCAGCAGCGTGCGGTGGAATACAACACTCTCTTCCGGAA GTACGACCACATGAGGGCTGCCATCCTGGAAAAGATGCCTCTTATGGAGCGAGGTGGCCC TCAGGTCGATGAGAAAGCAAAGGAAAGCGAAGAAGAAGAAGCGGCCCCTAACCCCACAGA GCCCCAGGCCTCGAAGCTCCTGGATCTCTTGGATCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 382-500, - strand, RNAz p=0.807154 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 382-500, - strand, RNAz p=0.807154 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 122-225, gnl|bosTau2|chr10 (13615414-13615517) | |
| 122-225, gnl|canFam2|chr8 (6795549-6795706) | |
| 122-225, gnl|danRer3|chrNA (163517573-163517460) | |
| 122-225, gnl|dasNov1|scaffold_25365 (13777-13646) | |
| 122-225, gnl|echTel1|scaffold_239457 (7837-7942) | |
| 122-225, gnl|fr1|chrUn (36775691-36775556) | |
| 122-225, gnl|hg17|chr14 (23103608-23103758) | |
| 122-225, gnl|Hg17|chr14 (23103712-23103609) | |
| 122-225, gnl|loxAfr1|scaffold_16557 (29334-29251) | |
| 122-225, gnl|mm7|chr14 (49969854-49969998) | |
| 122-225, gnl|Mm7|chr14 (49969958-49969855) | |
| 122-225, gnl|monDom2|scaffold_12 (26120655-26120542) | |
| 122-225, gnl|oryCun1|scaffold_211309 (43641-43496) | |
| 122-225, gnl|panTro1|chr15 (22073783-22073933) | |
| 122-225, gnl|rheMac2|chr7 (86403854-86404001) | |
| 122-225, gnl|rn3|chr15 (33225484-33225622) | |
| 122-225, gnl|tetNig1|chr5 (5593408-5593284) | |
| 122-225, gnl|xenTro1|scaffold_13 (3091510-3091404) | |
| 382-536, gnl|bosTau2|chr10 (13616181-13616335) | |
| 382-536, gnl|Hg17|chr14 (23102918-23102763) | |
| 382-536, gnl|Mm7|chr14 (49969243-49969088) | |
| 589-720, gnl|bosTau2|chr10 (13616553-13616684) | |
| 589-720, gnl|canFam2|chr8 (6794403-6794547) | |
| 589-720, gnl|danRer3|chrNA (163521729-163521602) | |
| 589-720, gnl|dasNov1|scaffold_25365 (14956-14810) | |
| 589-720, gnl|echTel1|scaffold_311044 (379-514) | |
| 589-720, gnl|fr1|chrUn (36777670-36777539) | |
| 589-720, gnl|hg17|chr14 (23102413-23102559) | |
| 589-720, gnl|Hg17|chr14 (23102552-23102421) | |
| 589-720, gnl|loxAfr1|scaffold_16557 (31010-30861) | |
| 589-720, gnl|mm7|chr14 (49968743-49968890) | |
| 589-720, gnl|Mm7|chr14 (49968882-49968751) | |
| 589-720, gnl|monDom2|scaffold_12 (26122041-26121905) | |
| 589-720, gnl|oryCun1|scaffold_211309 (44722-44575) | |
| 589-720, gnl|panTro1|chr15 (22072586-22072732) | |
| 589-720, gnl|rheMac2|chr7 (86402663-86402809) | |
| 589-720, gnl|rn3|chr15 (33224379-33224526) | |
| 589-720, gnl|tetNig1|chr5 (5594464-5594333) | |
| 589-720, gnl|xenTro1|scaffold_13 (3097389-3097258) | |
| 794-930, gnl|bosTau2|chr10 (13618277-13618414) | |
| 794-930, gnl|Hg17|chr14 (23101474-23101337) | |
| 794-930, gnl|Mm7|chr14 (49967978-49967843) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 122-225, gnl|bosTau2|chr10 (13615414-13615517) | |
| 122-225, gnl|canFam2|chr8 (6795549-6795706) | |
| 122-225, gnl|danRer3|chrNA (163517573-163517460) | |
| 122-225, gnl|dasNov1|scaffold_25365 (13777-13646) | |
| 122-225, gnl|echTel1|scaffold_239457 (7837-7942) | |
| 122-225, gnl|fr1|chrUn (36775691-36775556) | |
| 122-225, gnl|hg17|chr14 (23103608-23103758) | |
| 122-225, gnl|Hg17|chr14 (23103712-23103609) | |
| 122-225, gnl|loxAfr1|scaffold_16557 (29334-29251) | |
| 122-225, gnl|mm7|chr14 (49969854-49969998) | |
| 122-225, gnl|Mm7|chr14 (49969958-49969855) | |
| 122-225, gnl|monDom2|scaffold_12 (26120655-26120542) | |
| 122-225, gnl|oryCun1|scaffold_211309 (43641-43496) | |
| 122-225, gnl|panTro1|chr15 (22073783-22073933) | |
| 122-225, gnl|rheMac2|chr7 (86403854-86404001) | |
| 122-225, gnl|rn3|chr15 (33225484-33225622) | |
| 122-225, gnl|tetNig1|chr5 (5593408-5593284) | |
| 122-225, gnl|xenTro1|scaffold_13 (3091510-3091404) | |
| 382-536, gnl|bosTau2|chr10 (13616181-13616335) | |
| 382-536, gnl|Hg17|chr14 (23102918-23102763) | |
| 382-536, gnl|Mm7|chr14 (49969243-49969088) | |
| 589-720, gnl|bosTau2|chr10 (13616553-13616684) | |
| 589-720, gnl|canFam2|chr8 (6794403-6794547) | |
| 589-720, gnl|danRer3|chrNA (163521729-163521602) | |
| 589-720, gnl|dasNov1|scaffold_25365 (14956-14810) | |
| 589-720, gnl|echTel1|scaffold_311044 (379-514) | |
| 589-720, gnl|fr1|chrUn (36777670-36777539) | |
| 589-720, gnl|hg17|chr14 (23102413-23102559) | |
| 589-720, gnl|Hg17|chr14 (23102552-23102421) | |
| 589-720, gnl|loxAfr1|scaffold_16557 (31010-30861) | |
| 589-720, gnl|mm7|chr14 (49968743-49968890) | |
| 589-720, gnl|Mm7|chr14 (49968882-49968751) | |
| 589-720, gnl|monDom2|scaffold_12 (26122041-26121905) | |
| 589-720, gnl|oryCun1|scaffold_211309 (44722-44575) | |
| 589-720, gnl|panTro1|chr15 (22072586-22072732) | |
| 589-720, gnl|rheMac2|chr7 (86402663-86402809) | |
| 589-720, gnl|rn3|chr15 (33224379-33224526) | |
| 589-720, gnl|tetNig1|chr5 (5594464-5594333) | |
| 589-720, gnl|xenTro1|scaffold_13 (3097389-3097258) | |
| 794-930, gnl|bosTau2|chr10 (13618277-13618414) | |
| 794-930, gnl|Hg17|chr14 (23101474-23101337) | |
| 794-930, gnl|Mm7|chr14 (49967978-49967843) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) | |
| clu (0.119646) |