Non-Coding RNA Search

Ss1.1-rpigca0_000531.5

Sequence:


               
               AACACTTCTCCAAGTAGCCTTGGCCAGAAGAAGCAGAAAACAACTTTCCCATGTATCCCA
TGTCAGACTCGAATACCCACTGGAGAGAAGAATGGTGGCCAGTCTAGGGGACCACAGAAG
ACTCCCCATACAGCTTGTGATGCTCACCCCTACCTGCCTGGCTCACTCACCTCCCTGCTG
CTGGCTGGTGGCACTGCTCCTTGTCCTATCAGGGAGCATGCTGGAACCTACCACTGTGTG
AAGTTTGATGGCTTGAGTGGGCACGCAGAAAAGAAGCTGGACGAGGGCACCTCTGTGCTT
GTGAAGAGACCTACGGACACAGAGCCAGACCTCTGGATCATCCAACCCCAGGAGCTGGTA
TTGGCAACCACAGGAGACACTGTCTTCCTGAACTGCACGGTGCTTGGAAATGGTCCCTCA
GGACCCATCAGGTGGTTTCGGGGGACTGGTCTGAGCCGAGAGGCCATTTACAACTTTAGA
GGCATCTCCCACCCCAATGTGACAGCAGTCCAGGCCTCCAACAGCGATTTCAGCATTCTT
TTTCATGGCATCTCCACTGAGGATTCAGGCACTTACTACTGTGTAAAGTTTCAGAGGAAA
CACAACAGGCAGTACCTATCTGGACAGGGCACCAGGCTGAGAGTGAAAGCAAAGCCCACT
CCTCCCCAAGAGCCAGAATTCACCAATGAACATGCAGCCAAGTTATTTCCATCAGGCCTC
CTGTCTGTGTTCATACCTGCAGTCCTGGGCCTGAAAGCAGTGACTTTGGCCACACTTGTG
CTGGCCCTGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACACTTCTCCAAGTAGCCTTGGCCAGAAGAAGCAGAAAACAACTTTCCCATGTATCCCA
TGTCAGACTCGAATACCCACTGGAGAGAAGAATGGTGGCCAGTCTAGGGGACCACAGAAG
ACTCCCCATACAGCTTGTGATGCTCACCCCTACCTGCCTGGCTCACTCACCTCCCTGCTG
CTGGCTGGTGGCACTGCTCCTTGTCCTATCAGGGAGCATGCTGGAACCTACCACTGTGTG
AAGTTTGATGGCTTGAGTGGGCACGCAGAAAAGAAGCTGGACGAGGGCACCTCTGTGCTT
GTGAAGAGACCTACGGACACAGAGCCAGACCTCTGGATCATCCAACCCCAGGAGCTGGTA
TTGGCAACCACAGGAGACACTGTCTTCCTGAACTGCACGGTGCTTGGAAATGGTCCCTCA
GGACCCATCAGGTGGTTTCGGGGGACTGGTCTGAGCCGAGAGGCCATTTACAACTTTAGA
GGCATCTCCCACCCCAATGTGACAGCAGTCCAGGCCTCCAACAGCGATTTCAGCATTCTT
TTTCATGGCATCTCCACTGAGGATTCAGGCACTTACTACTGTGTAAAGTTTCAGAGGAAA
CACAACAGGCAGTACCTATCTGGACAGGGCACCAGGCTGAGAGTGAAAGCAAAGCCCACT
CCTCCCCAAGAGCCAGAATTCACCAATGAACATGCAGCCAAGTTATTTCCATCAGGCCTC
CTGTCTGTGTTCATACCTGCAGTCCTGGGCCTGAAAGCAGTGACTTTGGCCACACTTGTG
CTGGCCCTGATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37904414|gb|AAR04783.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37904414|gb|AAR04783.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               387-506, + strand, RNAz p=0.651918

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               387-506, + strand, RNAz p=0.651918

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-213, gnl|bosTau2|chr13 (41190791-41190995)
               

               
               1-213, gnl|canFam2|chr24 (22527046-22526896)
               

               
               1-213, gnl|echTel1|scaffold_298471 (54065-54172)
               

               
               1-213, gnl|hg17|chr20 (1419900-1420050)
               

               
               1-213, gnl|Hg17|chr20 (1420130-1419920)
               

               
               1-213, gnl|loxAfr1|scaffold_43870 (1888-1768)
               

               
               1-213, gnl|oryCun1|scaffold_167793 (8094-8244)
               

               
               1-213, gnl|panTro1|chr21 (1452067-1452217)
               

               
               1-213, gnl|rheMac2|chr10 (34754916-34755066)
               


               
               308-649, gnl|bosTau2|chr13 (41195836-41196177)
               

               
               308-649, gnl|Hg17|chr20 (1407252-1406911)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-213, gnl|bosTau2|chr13 (41190791-41190995)
               

               
               1-213, gnl|canFam2|chr24 (22527046-22526896)
               

               
               1-213, gnl|echTel1|scaffold_298471 (54065-54172)
               

               
               1-213, gnl|hg17|chr20 (1419900-1420050)
               

               
               1-213, gnl|Hg17|chr20 (1420130-1419920)
               

               
               1-213, gnl|loxAfr1|scaffold_43870 (1888-1768)
               

               
               1-213, gnl|oryCun1|scaffold_167793 (8094-8244)
               

               
               1-213, gnl|panTro1|chr21 (1452067-1452217)
               

               
               1-213, gnl|rheMac2|chr10 (34754916-34755066)
               


               
               308-649, gnl|bosTau2|chr13 (41195836-41196177)
               

               
               308-649, gnl|Hg17|chr20 (1407252-1406911)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-213, gnl\|bosTau2\|chr13 (41190791-41190995)
	1-213, gnl\|canFam2\|chr24 (22527046-22526896)
	1-213, gnl\|echTel1\|scaffold_298471 (54065-54172)
	1-213, gnl\|hg17\|chr20 (1419900-1420050)
	1-213, gnl\|Hg17\|chr20 (1420130-1419920)
	1-213, gnl\|loxAfr1\|scaffold_43870 (1888-1768)
	1-213, gnl\|oryCun1\|scaffold_167793 (8094-8244)
	1-213, gnl\|panTro1\|chr21 (1452067-1452217)
	1-213, gnl\|rheMac2\|chr10 (34754916-34755066)

	308-649, gnl\|bosTau2\|chr13 (41195836-41196177)
	308-649, gnl\|Hg17\|chr20 (1407252-1406911)