Non-Coding RNA Search

Ss1.1-rpigca0_001422.5

Sequence:


               
               GAACGGAGTGGGACGCCCACCCAAGATGAGATGATGGACAAGCCCACATCCAGCAGTGTA
GATACCATGTCCCTGCTTTCCAAGATCATTAGCCCTGGTTCCTCAACGCCCAGCAGTACA
AGATCACCACCCCCTGGGAGAGAGGAAAGCTACCCTCGAGAGCTCTCCAATTCTCTATCT
ACATATCGGCCCTTTGGTTTGGGCAGTGAATCACCCTATAAGCAGCCGTCTGATGGGATG
GAGAGACCGTCTTCCCTGATGGACTCTTCACAGGAGAAATTCTATCCAGATACTTCTTTC
CAGGAAGATGAAGATTACCGAGATTTTGAGTATTCAGGGCCTCCACCCTCTGCCATGATG
AACCTAGAGAAGAAACCGGCCAAATCTATCCTGAAATCAAGCAAGCTTTCTGATACCACT
GAGTACCAGCCAATCCTGTCCAGTTACAGCCACAGGGCCCAAGAATTTGGGGTCAAATCT
GCCTTCCCTCCATCTGTAAGGGCCCTTCTGGACTCTAGTGAGAACTGTGACCGTCTGTCA
TCTTCCCCTGGGCTATTTGGTGCCTTCAGCATAAGAGGGAATGAACCTGGGTCTGACCGG
TCACCTTCACCGAAATACCCTTGCCGCTCCCACGGGCCACCCACCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACGGAGTGGGACGCCCACCCAAGATGAGATGATGGACAAGCCCACATCCAGCAGTGTA
GATACCATGTCCCTGCTTTCCAAGATCATTAGCCCTGGTTCCTCAACGCCCAGCAGTACA
AGATCACCACCCCCTGGGAGAGAGGAAAGCTACCCTCGAGAGCTCTCCAATTCTCTATCT
ACATATCGGCCCTTTGGTTTGGGCAGTGAATCACCCTATAAGCAGCCGTCTGATGGGATG
GAGAGACCGTCTTCCCTGATGGACTCTTCACAGGAGAAATTCTATCCAGATACTTCTTTC
CAGGAAGATGAAGATTACCGAGATTTTGAGTATTCAGGGCCTCCACCCTCTGCCATGATG
AACCTAGAGAAGAAACCGGCCAAATCTATCCTGAAATCAAGCAAGCTTTCTGATACCACT
GAGTACCAGCCAATCCTGTCCAGTTACAGCCACAGGGCCCAAGAATTTGGGGTCAAATCT
GCCTTCCCTCCATCTGTAAGGGCCCTTCTGGACTCTAGTGAGAACTGTGACCGTCTGTCA
TCTTCCCCTGGGCTATTTGGTGCCTTCAGCATAAGAGGGAATGAACCTGGGTCTGACCGG
TCACCTTCACCGAAATACCCTTGCCGCTCCCACGGGCCACCCACCCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-359, + strand, RNAz p=0.616855

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-359, + strand, RNAz p=0.616855

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-613, gnl|bosTau2|chr3 (17029850-17029238)
               

               
               1-613, gnl|Hg17|chr1 (147256679-147257291)
               

               
               1-613, gnl|Mm7|chr3 (95639801-95639189)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-613, gnl|bosTau2|chr3 (17029850-17029238)
               

               
               1-613, gnl|Hg17|chr1 (147256679-147257291)
               

               
               1-613, gnl|Mm7|chr3 (95639801-95639189)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-613, gnl\|bosTau2\|chr3 (17029850-17029238)
	1-613, gnl\|Hg17\|chr1 (147256679-147257291)
	1-613, gnl\|Mm7\|chr3 (95639801-95639189)