Ss1.1-rpigca0_001487.5
|
ATTGTTGACTGGGCTTTGGGGTTGAACTTTTTTTTTTTTTTTTTTAAGGAAAGAAAAATT
AACCCTGGATCCATCTGTATTTTTTTTTTTTTTAATTTCAGGGTTTTTTTGTTGGTGATG
GTGGTTCTTAATTTTTAGTTTGGGGGAAGTAGATGTTTTTATAAATATGTTGATTTCGTT
TGTTTCTTGCTTTCCCATATTAGGGGTGATAGCCAAAGGGGTCATGATAAGAGGACGGGG
AACAGATAGAACTGGTGAAGAGGCCTGCCTGGCTCCAGTCCTGTCAGGAAGTACATTTAG
TAGGGCACCAAGCCTGCCCCCCTAAAGCCACTTAGGCGTTCTCCTTTGCTTGTAAAGCCA
CTTAGGTGTTTGCTTGTGCAGGCAGCTTTCTGCTGCGTTTGGTGTGAAGGCAGTCGGGGC
TTGTTCTGCCAACCTATCGGCCCCTCTTCCCACAATCCTTGGGCCGGGCCAGACTCTAAT
CTTGAGCAAATGCCACCTTCCCCTGTGAGTGACACATCTTTAAATCTTTTTTTAAAGCTA
CTATCTGCAGGTTGGAAGGGGAAGAATGGGGAGGGGGTTATTGCCAAATATGTTCCTTGG
GGGTTGGGGTGTTTGTGTATGTTATCTCCCTCGATTTCCCCAGAAGTGAGGCATCTTTTT
GTTTTTTCTCAGTCCAAAATCAAGAGGGTGGGGAGAGAGAGGAGAGAGGCTGCCAGGTTT
GGGGGAAGGTAAAACACCACTGTCCTGCCCTTGGCCCTGAACCCTACCATCTGAACCCCT
CAAACATCCTCAGGATTTTATAAGGCTGTCACAGTGGGGAATCTCTCCTGTCAAAGATCC
CGGCAGGATTGGGGGGCAGGTTGGGAGTGTGATGGCTGGCGGGGGGAGGCATGGGCCAGG
GGCAGTTCTCGCCTCACTTGTAAACTTGTAGTTTCACAGAAAAACAAAAAAACAAAAAAC
AAAAAAAATGCAGTTTTAAATAAAGAAATTTCTTTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATTGTTGACTGGGCTTTGGGGTTGAACTTTTTTTTTTTTTTTTTTAAGGAAAGAAAAATT
AACCCTGGATCCATCTGTATTTTTTTTTTTTTTAATTTCAGGGTTTTTTTGTTGGTGATG
GTGGTTCTTAATTTTTAGTTTGGGGGAAGTAGATGTTTTTATAAATATGTTGATTTCGTT
TGTTTCTTGCTTTCCCATATTAGGGGTGATAGCCAAAGGGGTCATGATAAGAGGACGGGG
AACAGATAGAACTGGTGAAGAGGCCTGCCTGGCTCCAGTCCTGTCAGGAAGTACATTTAG
TAGGGCACCAAGCCTGCCCCCCTAAAGCCACTTAGGCGTTCTCCTTTGCTTGTAAAGCCA
CTTAGGTGTTTGCTTGTGCAGGCAGCTTTCTGCTGCGTTTGGTGTGAAGGCAGTCGGGGC
TTGTTCTGCCAACCTATCGGCCCCTCTTCCCACAATCCTTGGGCCGGGCCAGACTCTAAT
CTTGAGCAAATGCCACCTTCCCCTGTGAGTGACACATCTTTAAATCTTTTTTTAAAGCTA
CTATCTGCAGGTTGGAAGGGGAAGAATGGGGAGGGGGTTATTGCCAAATATGTTCCTTGG
GGGTTGGGGTGTTTGTGTATGTTATCTCCCTCGATTTCCCCAGAAGTGAGGCATCTTTTT
GTTTTTTCTCAGTCCAAAATCAAGAGGGTGGGGAGAGAGAGGAGAGAGGCTGCCAGGTTT
GGGGGAAGGTAAAACACCACTGTCCTGCCCTTGGCCCTGAACCCTACCATCTGAACCCCT
CAAACATCCTCAGGATTTTATAAGGCTGTCACAGTGGGGAATCTCTCCTGTCAAAGATCC
CGGCAGGATTGGGGGGCAGGTTGGGAGTGTGATGGCTGGCGGGGGGAGGCATGGGCCAGG
GGCAGTTCTCGCCTCACTTGTAAACTTGTAGTTTCACAGAAAAACAAAAAAACAAAAAAC
AAAAAAAATGCAGTTTTAAATAAAGAAATTTCTTTT
|
|
12-101, - strand, RNAz p=0.97268 |
|
316-442, - strand, RNAz p=0.999205 |
|
317-416, - strand, RNAz p=0.831839 |
|
599-750, - strand, RNAz p=0.967377 |
|
677-785, - strand, RNAz p=0.541492 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
12-101, - strand, RNAz p=0.97268 |
|
316-442, - strand, RNAz p=0.999205 |
|
317-416, - strand, RNAz p=0.831839 |
|
599-750, - strand, RNAz p=0.967377 |
|
677-785, - strand, RNAz p=0.541492 |
|
1-976, gnl|bosTau2|chr23 (23685496-23686473) |
|
1-976, gnl|canFam2|chr12 (4581590-4580715) |
|
1-976, gnl|dasNov1|scaffold_211125 (819-4) |
|
1-976, gnl|echTel1|scaffold_201277 (3252-4080) |
|
1-976, gnl|hg17|chr3 (144379556-144380434) |
|
1-976, gnl|Hg17|chr6 (32261492-32260502) |
|
1-976, gnl|loxAfr1|scaffold_32936 (6092-6951) |
|
1-976, gnl|mm7|chr17 (32680762-32681585) |
|
1-976, gnl|Mm7|chr17 (32681015-32681934) |
|
1-976, gnl|monDom2|scaffold_42 (17143928-17144802) |
|
1-976, gnl|oryCun1|scaffold_192689 (3313-4147) |
|
1-976, gnl|panTro1|chr5 (32630314-32629439) |
|
1-976, gnl|rheMac2|chr4 (31807930-31807063) |
|
1-976, gnl|rn3|chr20 (4255384-4254548) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-976, gnl|bosTau2|chr23 (23685496-23686473) |
|
1-976, gnl|canFam2|chr12 (4581590-4580715) |
|
1-976, gnl|dasNov1|scaffold_211125 (819-4) |
|
1-976, gnl|echTel1|scaffold_201277 (3252-4080) |
|
1-976, gnl|hg17|chr3 (144379556-144380434) |
|
1-976, gnl|Hg17|chr6 (32261492-32260502) |
|
1-976, gnl|loxAfr1|scaffold_32936 (6092-6951) |
|
1-976, gnl|mm7|chr17 (32680762-32681585) |
|
1-976, gnl|Mm7|chr17 (32681015-32681934) |
|
1-976, gnl|monDom2|scaffold_42 (17143928-17144802) |
|
1-976, gnl|oryCun1|scaffold_192689 (3313-4147) |
|
1-976, gnl|panTro1|chr5 (32630314-32629439) |
|
1-976, gnl|rheMac2|chr4 (31807930-31807063) |
|
1-976, gnl|rn3|chr20 (4255384-4254548) |
|
fhi (0.508733) |
|
eep (0.367692) |
|
eru (0.240096) |
|
jej (0.197844) |
|
fty (0.17584) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
mcp (0.170648) |
|
csp (0.161186) |
|
clu (0.119646) |
|
eje (0.0988338) |
|
fhi (0.508733) |
|
eep (0.367692) |
|
eru (0.240096) |
|
jej (0.197844) |
|
fty (0.17584) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
mcp (0.170648) |
|
csp (0.161186) |
|
clu (0.119646) |
|
eje (0.0988338) |
