Non-Coding RNA Search

Ss1.1-rpigca0_001822.5

Sequence:


               
               TTACTCATTCTTGCTCAACCTCAGAGAATTCTCAATGGAGAGAAACCATATGTGTGCAAT
GACTGTGGAAAAGCCTTTAGCCATGACTTCTTTCTCAGTGAACATCAGAGAACTCATATT
GGGGAGAAACCATATGAATGTAAGGAATGCAACAAAGCTTTCAGACAGAGTGCACACCTT
GCTCAACATCAAAGGATCCACACTGGAGAGAAACCCTTTGCATGCAATGAATGTGGGAAG
GCCTTTAGCCGTTATGCCTTCCTC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
CGCATAGCCCTTACTCTGCATCAAAGAATTCATACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACTCATTCTTGCTCAACCTCAGAGAATTCTCAATGGAGAGAAACCATATGTGTGCAAT
GACTGTGGAAAAGCCTTTAGCCATGACTTCTTTCTCAGTGAACATCAGAGAACTCATATT
GGGGAGAAACCATATGAATGTAAGGAATGCAACAAAGCTTTCAGACAGAGTGCACACCTT
GCTCAACATCAAAGGATCCACACTGGAGAGAAACCCTTTGCATGCAATGAATGTGGGAAG
GCCTTTAGCCGTTATGCCTTCCTC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
CGCATAGCCCTTACTCTGCATCAAAGAATTCATACA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-263, gnl|bosTau2|chr18 (42675358-42675095)
               

               
               1-263, gnl|Hg17|chr19 (62315283-62315042)
               

               
               1-263, gnl|Mm7|chr7 (5877678-5877415)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-263, gnl|bosTau2|chr18 (42675358-42675095)
               

               
               1-263, gnl|Hg17|chr19 (62315283-62315042)
               

               
               1-263, gnl|Mm7|chr7 (5877678-5877415)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               clu (0.119646)

	1-263, gnl\|bosTau2\|chr18 (42675358-42675095)
	1-263, gnl\|Hg17\|chr19 (62315283-62315042)
	1-263, gnl\|Mm7\|chr7 (5877678-5877415)