Non-Coding RNA Search

Ss1.1-rpigca0_001922.5

Sequence:


               
               GTCTGTCCTGCGCCAAGAAACAGAGTTTTTTCAGAAGAATCAAACAGGTGCCATCACATC
TCGGGTAACAGAGGACACATCCACTGTGAGTGTGTCTCTGAGTTCGGAGCTGAGCCTCTT
GCTGTGGTACCTCGCACGGGGACTGTGTCTCTTAGGGCTCATGCTCTGGGGGTCACCTCC
CCTCACCATGGTCACCCTGGCCGCCTTGCCACTGCTTTTCCTTCTGCCTGAGAAGCTGGG
GAAATGGCACCAGGTGCTGGCAGCACAGGTGCAGGAATCTCTGGCAAAGTCAAGCCAGGT
GGCCATTGAGGTTCTGTCAGCTATGCCTACTGTCCGGAGCTTTGCCAATGAAGAGGGTGA
GGCCCAGAAGTTCAAGCAAAAGCTGCAGGACATGAAGACACTCAACCAGAAGGAGGCCCT
GGCCTATGCGGTCGACCTCTGGACCACCAGTATCTCAGGGATGTTGCTGAAGGTGGGAAT
CCTGTATGTTGGCGGGAAGCTGGTGGCAGGTGGGGCTATAAGCAGCGGAAACCTCGTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTGTCCTGCGCCAAGAAACAGAGTTTTTTCAGAAGAATCAAACAGGTGCCATCACATC
TCGGGTAACAGAGGACACATCCACTGTGAGTGTGTCTCTGAGTTCGGAGCTGAGCCTCTT
GCTGTGGTACCTCGCACGGGGACTGTGTCTCTTAGGGCTCATGCTCTGGGGGTCACCTCC
CCTCACCATGGTCACCCTGGCCGCCTTGCCACTGCTTTTCCTTCTGCCTGAGAAGCTGGG
GAAATGGCACCAGGTGCTGGCAGCACAGGTGCAGGAATCTCTGGCAAAGTCAAGCCAGGT
GGCCATTGAGGTTCTGTCAGCTATGCCTACTGTCCGGAGCTTTGCCAATGAAGAGGGTGA
GGCCCAGAAGTTCAAGCAAAAGCTGCAGGACATGAAGACACTCAACCAGAAGGAGGCCCT
GGCCTATGCGGTCGACCTCTGGACCACCAGTATCTCAGGGATGTTGCTGAAGGTGGGAAT
CCTGTATGTTGGCGGGAAGCTGGTGGCAGGTGGGGCTATAAGCAGCGGAAACCTCGTCAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               44-280, gnl|bosTau2|chr23 (5533368-5533133)
               

               
               44-280, gnl|Hg17|chr6 (32926908-32926673)
               

               
               44-280, gnl|Mm7|chr17 (32270401-32270617)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-280, gnl|bosTau2|chr23 (5533368-5533133)
               

               
               44-280, gnl|Hg17|chr6 (32926908-32926673)
               

               
               44-280, gnl|Mm7|chr17 (32270401-32270617)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.16592)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               clu (0.119646)

	44-280, gnl\|bosTau2\|chr23 (5533368-5533133)
	44-280, gnl\|Hg17\|chr6 (32926908-32926673)
	44-280, gnl\|Mm7\|chr17 (32270401-32270617)