Non-Coding RNA Search

Ss1.1-rpigca0_002269.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTGCCGAACAAATCACACATTTAATTCAAATAATAAATGGCTGT
TTCTAAAATTTCCTGGTATATATAAAATACATCAAGTCTGTCTTGTGACAATTTCATTTG
AACTTAAAGAAGAACTGTTAATAGTTCTAGTTATACAAGCAGTTTGTGGATACGACGACC
TGTGTAATCCGCTAGTGATCTTAAGGCTGCTGCTGTAGTCCTTCGAGAAGAATGCACCAA
GACACCATTTCATACAACTATAATGCATGCACCATATAAACTGATCTGGCTTTGAAAGAG
GTGGGTTGACAGTTACTCATGTAGTCACTATTCCACCTGTCCTTTGATTTAATTTTATTG
AGCTTCTCTGCAGCCTTTGATATGTTAGTAAAAAAGCTGAACACACAAGAGGATCTGTAA
CCCTGACAGTGATGTGGTGTGCATAAAGTATAGCTACACAGTCCTTCCACTTCTGGGTCC
ACATTGCCCTAGTGCGTTAAAAACTAAAATATCTTCTTTGATCAACCTTGAGGCATGAAT
TATGCTTTCTTCCATTAAAAACGACCCATCTAGACTTGATTATCTAGTAAGGCTTGGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTGCCGAACAAATCACACATTTAATTCAAATAATAAATGGCTGT
TTCTAAAATTTCCTGGTATATATAAAATACATCAAGTCTGTCTTGTGACAATTTCATTTG
AACTTAAAGAAGAACTGTTAATAGTTCTAGTTATACAAGCAGTTTGTGGATACGACGACC
TGTGTAATCCGCTAGTGATCTTAAGGCTGCTGCTGTAGTCCTTCGAGAAGAATGCACCAA
GACACCATTTCATACAACTATAATGCATGCACCATATAAACTGATCTGGCTTTGAAAGAG
GTGGGTTGACAGTTACTCATGTAGTCACTATTCCACCTGTCCTTTGATTTAATTTTATTG
AGCTTCTCTGCAGCCTTTGATATGTTAGTAAAAAAGCTGAACACACAAGAGGATCTGTAA
CCCTGACAGTGATGTGGTGTGCATAAAGTATAGCTACACAGTCCTTCCACTTCTGGGTCC
ACATTGCCCTAGTGCGTTAAAAACTAAAATATCTTCTTTGATCAACCTTGAGGCATGAAT
TATGCTTTCTTCCATTAAAAACGACCCATCTAGACTTGATTATCTAGTAAGGCTTGGTAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               17-598, gnl|bosTau2|chr5 (47031648-47031061)
               

               
               17-598, gnl|Hg17|chr12 (32787763-32788365)
               

               
               17-598, gnl|Mm7|chr16 (15857202-15856682)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-598, gnl|bosTau2|chr5 (47031648-47031061)
               

               
               17-598, gnl|Hg17|chr12 (32787763-32788365)
               

               
               17-598, gnl|Mm7|chr16 (15857202-15856682)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               aor (0.195274)
               

               
               isp (0.150376)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               isp (0.150376)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	17-598, gnl\|bosTau2\|chr5 (47031648-47031061)
	17-598, gnl\|Hg17\|chr12 (32787763-32788365)
	17-598, gnl\|Mm7\|chr16 (15857202-15856682)