Non-Coding RNA Search

Ss1.1-rpigca0_002704.5

Sequence:


               
               CAGACAGACCTCATCATTCTTGGTGTGACCCTGGTCCATGCATCGCCTGTCTCCTCTGTG
CTTGCCTTACTCAGGTGCTACCAGACTCTGGCCCCTGATGTCTGTAGTTTCACAGGATGC
CTTATTTGTGTTCTAGCCCCCACAAGGCCCCCCACTTTTATCTTAGAATGTTGTTTTTAA
TAATGTCAGCCCTGTGCCCCTTCCTCCCTCCCTTCCCTGCCCACCACTGCTGAGTGGCCT
AGGACTTTTTAAAGCTTTCTTTTCCCATCCCTGTGAGGGATCACACAGATGTCCTGAGTG
ATGCCTGAAGACTTCCCTTCCAACTAGACCGCAAGAGTGGCGGGGCTCCCTCCCCCTGCA
TGTAGCAGTCCTCAGACAGAGCTCTGGATCCTGGTTCCTTGACTTTTTCTTCTTGTTGAG
ACAAAAGGTACCAGTACCTTTGAGGACTGGTACTGGCTGTTCTGGAGTGGGGACTGGAGA
CCGGAGCAGCTGCAGTGGTTGTTGGGTGATGACATCAAGTCTCTTCCACCTCTGCGGCCC
ACTCTCTTCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGACAGACCTCATCATTCTTGGTGTGACCCTGGTCCATGCATCGCCTGTCTCCTCTGTG
CTTGCCTTACTCAGGTGCTACCAGACTCTGGCCCCTGATGTCTGTAGTTTCACAGGATGC
CTTATTTGTGTTCTAGCCCCCACAAGGCCCCCCACTTTTATCTTAGAATGTTGTTTTTAA
TAATGTCAGCCCTGTGCCCCTTCCTCCCTCCCTTCCCTGCCCACCACTGCTGAGTGGCCT
AGGACTTTTTAAAGCTTTCTTTTCCCATCCCTGTGAGGGATCACACAGATGTCCTGAGTG
ATGCCTGAAGACTTCCCTTCCAACTAGACCGCAAGAGTGGCGGGGCTCCCTCCCCCTGCA
TGTAGCAGTCCTCAGACAGAGCTCTGGATCCTGGTTCCTTGACTTTTTCTTCTTGTTGAG
ACAAAAGGTACCAGTACCTTTGAGGACTGGTACTGGCTGTTCTGGAGTGGGGACTGGAGA
CCGGAGCAGCTGCAGTGGTTGTTGGGTGATGACATCAAGTCTCTTCCACCTCTGCGGCCC
ACTCTCTTCTGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               196-305, - strand, RNAz p=0.998942
               

               
               441-552, - strand, RNAz p=0.590314

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-305, - strand, RNAz p=0.998942
               

               
               441-552, - strand, RNAz p=0.590314

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-409, gnl|bosTau2|chr3 (7800977-7801382)
               

               
               1-409, gnl|Hg17|chr1 (157781761-157781334)
               

               
               1-409, gnl|Mm7|chr1 (171433160-171433560)
               


               
               441-552, gnl|bosTau2|chr3 (7801392-7801502)
               

               
               441-552, gnl|canFam2|chr38 (24454703-24454409)
               

               
               441-552, gnl|echTel1|scaffold_238802 (13120-12810)
               

               
               441-552, gnl|hg17|chr1 (157781174-157781487)
               

               
               441-552, gnl|Hg17|chr1 (157781324-157781213)
               

               
               441-552, gnl|loxAfr1|scaffold_12031 (21785-22094)
               

               
               441-552, gnl|mm7|chr1 (171433687-171433439)
               

               
               441-552, gnl|Mm7|chr1 (171433570-171433661)
               

               
               441-552, gnl|panTro1|chr1 (139846515-139846828)
               

               
               441-552, gnl|rheMac2|chr1 (139613288-139613590)
               

               
               441-552, gnl|rn3|chr13 (87581987-87581737)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-409, gnl|bosTau2|chr3 (7800977-7801382)
               

               
               1-409, gnl|Hg17|chr1 (157781761-157781334)
               

               
               1-409, gnl|Mm7|chr1 (171433160-171433560)
               


               
               441-552, gnl|bosTau2|chr3 (7801392-7801502)
               

               
               441-552, gnl|canFam2|chr38 (24454703-24454409)
               

               
               441-552, gnl|echTel1|scaffold_238802 (13120-12810)
               

               
               441-552, gnl|hg17|chr1 (157781174-157781487)
               

               
               441-552, gnl|Hg17|chr1 (157781324-157781213)
               

               
               441-552, gnl|loxAfr1|scaffold_12031 (21785-22094)
               

               
               441-552, gnl|mm7|chr1 (171433687-171433439)
               

               
               441-552, gnl|Mm7|chr1 (171433570-171433661)
               

               
               441-552, gnl|panTro1|chr1 (139846515-139846828)
               

               
               441-552, gnl|rheMac2|chr1 (139613288-139613590)
               

               
               441-552, gnl|rn3|chr13 (87581987-87581737)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               clu (0.358938)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               cov (0.132153)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.358938)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               cov (0.132153)

	196-305, - strand, RNAz p=0.998942
	441-552, - strand, RNAz p=0.590314

	1-409, gnl\|bosTau2\|chr3 (7800977-7801382)
	1-409, gnl\|Hg17\|chr1 (157781761-157781334)
	1-409, gnl\|Mm7\|chr1 (171433160-171433560)

	441-552, gnl\|bosTau2\|chr3 (7801392-7801502)
	441-552, gnl\|canFam2\|chr38 (24454703-24454409)
	441-552, gnl\|echTel1\|scaffold_238802 (13120-12810)
	441-552, gnl\|hg17\|chr1 (157781174-157781487)
	441-552, gnl\|Hg17\|chr1 (157781324-157781213)
	441-552, gnl\|loxAfr1\|scaffold_12031 (21785-22094)
	441-552, gnl\|mm7\|chr1 (171433687-171433439)
	441-552, gnl\|Mm7\|chr1 (171433570-171433661)
	441-552, gnl\|panTro1\|chr1 (139846515-139846828)
	441-552, gnl\|rheMac2\|chr1 (139613288-139613590)
	441-552, gnl\|rn3\|chr13 (87581987-87581737)