Non-Coding RNA Search

Ss1.1-rpigca0_002733.5

Sequence:


               
               AGAAAAGAACAGCGGGTACCGCGAAGTCCAGTACTGGGACCAGCGCTACCAAGGCGCTGC
CGACTCTGCCCCCTACGAGTGGTTCGGGGACTTCTCCTCCTTCCGTGACCTCCTAGAGCC
GGAGCTGCGGCCCGAGGACCGTATCCTTGTGTTAGGCTGTGGGAACAGTGCCCTGAGTTA
TGAGCTGTTCCTTGGGGGCTTCCCTGATGTGACCAGTGTGGACTACTCGTCAGTGGTGGT
GGATGCCATGCGGGCTCGCTATGCCCATGTGCCCAAGCTGCGCTGGGAGACCATGGATGT
TCGGGCACTGGGCTTTCCCAGTGAGTCCTTCAACGTGGTGCTTGAGAAGGGCACGCTGGA
TGCCCTGTTGACTGGAGAACAGGATCCCTGGATTGTGTCCTCTGAAGGTGTCCACACTGT
GGACCAGGTGCTGAGTGAGGTGAGCCGAGTGCTGGTCCCTGGGGGCCGGTTCATCTCAAT
GACCTCTGCTGCCCCTCACTTCCGGGCAAGACACTATGCCCAAACTCGTTATGGCTGGTC
CTTGAGGCATGCAACCTATGGCAGTGGCTTCCATTTCCATTTCTACCTCATGCATAAGGG
TGGAGAGCTCAGTGTGGCCCAGCTGGCTCTTGGAGCCCAGATCCTTTCACCCCCTAGACC
TCCCACTCCACCCTGCTTCCTCTCAGACTCAGATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAAGAACAGCGGGTACCGCGAAGTCCAGTACTGGGACCAGCGCTACCAAGGCGCTGC
CGACTCTGCCCCCTACGAGTGGTTCGGGGACTTCTCCTCCTTCCGTGACCTCCTAGAGCC
GGAGCTGCGGCCCGAGGACCGTATCCTTGTGTTAGGCTGTGGGAACAGTGCCCTGAGTTA
TGAGCTGTTCCTTGGGGGCTTCCCTGATGTGACCAGTGTGGACTACTCGTCAGTGGTGGT
GGATGCCATGCGGGCTCGCTATGCCCATGTGCCCAAGCTGCGCTGGGAGACCATGGATGT
TCGGGCACTGGGCTTTCCCAGTGAGTCCTTCAACGTGGTGCTTGAGAAGGGCACGCTGGA
TGCCCTGTTGACTGGAGAACAGGATCCCTGGATTGTGTCCTCTGAAGGTGTCCACACTGT
GGACCAGGTGCTGAGTGAGGTGAGCCGAGTGCTGGTCCCTGGGGGCCGGTTCATCTCAAT
GACCTCTGCTGCCCCTCACTTCCGGGCAAGACACTATGCCCAAACTCGTTATGGCTGGTC
CTTGAGGCATGCAACCTATGGCAGTGGCTTCCATTTCCATTTCTACCTCATGCATAAGGG
TGGAGAGCTCAGTGTGGCCCAGCTGGCTCTTGGAGCCCAGATCCTTTCACCCCCTAGACC
TCCCACTCCACCCTGCTTCCTCTCAGACTCAGATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14150112|ref|NP_115707.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14150112|ref|NP_115707.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               313-444, + strand, RNAz p=0.627273

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               313-444, + strand, RNAz p=0.627273

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               154-444, gnl|bosTau2|chr1 (51215045-51214755)
               

               
               154-444, gnl|Hg17|chr3 (185457961-185458251)
               

               
               154-444, gnl|Mm7|chr16 (20167645-20167935)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               154-444, gnl|bosTau2|chr1 (51215045-51214755)
               

               
               154-444, gnl|Hg17|chr3 (185457961-185458251)
               

               
               154-444, gnl|Mm7|chr16 (20167645-20167935)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	154-444, gnl\|bosTau2\|chr1 (51215045-51214755)
	154-444, gnl\|Hg17\|chr3 (185457961-185458251)
	154-444, gnl\|Mm7\|chr16 (20167645-20167935)