Non-Coding RNA Search

Ss1.1-rpigca0_002853.5

Sequence:


               
               GCTGAGGATCATGGGGCCCCGAGGCCTCTTCCTGCTGCTCTCGGGGACCCTGGCCCTGAC
CGGGACCCAGGCGGGTCCCCACTCCCTGAGCTATTTCTACACCGCCGTGTCCCGGCCCGA
CCGCGGGGACTCCCGCTTCATCGCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTT
CGACAGCGACGCCCCGAATCCGAGGGAGGAGCCGCGGGCGCCGTGGATACAGCAGGAGGG
GCAGGAGTATTGGGATAGGAACACGCAGATTTACAAGGACAACGCACAGACTTACCGAGT
GAACCTGAACAACCTGCGCGGCTACTACAACCAGAGCGAGGCCGGGTCTCACACCTTCCA
GAACATGTACGGCTGCTACTTGGGACCAGACGGGCTCCTCCTCCACGGGTACCGTCAGTA
CGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGC
GGACACGGCGGCTCAGATCACCAAGCGCAAGTGGGAGGCGAGTGGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGAGGATCATGGGGCCCCGAGGCCTCTTCCTGCTGCTCTCGGGGACCCTGGCCCTGAC
CGGGACCCAGGCGGGTCCCCACTCCCTGAGCTATTTCTACACCGCCGTGTCCCGGCCCGA
CCGCGGGGACTCCCGCTTCATCGCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTT
CGACAGCGACGCCCCGAATCCGAGGGAGGAGCCGCGGGCGCCGTGGATACAGCAGGAGGG
GCAGGAGTATTGGGATAGGAACACGCAGATTTACAAGGACAACGCACAGACTTACCGAGT
GAACCTGAACAACCTGCGCGGCTACTACAACCAGAGCGAGGCCGGGTCTCACACCTTCCA
GAACATGTACGGCTGCTACTTGGGACCAGACGGGCTCCTCCTCCACGGGTACCGTCAGTA
CGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGC
GGACACGGCGGCTCAGATCACCAAGCGCAAGTGGGAGGCGAGTGGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33468740|dbj|BAC81551.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33468740|dbj|BAC81551.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               78-345, gnl|bosTau2|chr23 (20551142-20551409)
               

               
               78-345, gnl|Hg17|chr6 (31432710-31432443)
               

               
               78-345, gnl|Mm7|chr17 (33358731-33358998)
               


               
               378-517, gnl|bosTau2|chr20 (36655627-36655762)
               

               
               378-517, gnl|Hg17|chr6 (31347071-31346932)
               

               
               378-517, gnl|Mm7|chr17 (32077846-32077709)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-345, gnl|bosTau2|chr23 (20551142-20551409)
               

               
               78-345, gnl|Hg17|chr6 (31432710-31432443)
               

               
               78-345, gnl|Mm7|chr17 (33358731-33358998)
               


               
               378-517, gnl|bosTau2|chr20 (36655627-36655762)
               

               
               378-517, gnl|Hg17|chr6 (31347071-31346932)
               

               
               378-517, gnl|Mm7|chr17 (32077846-32077709)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               clu (0.598229)
               

               
               cty (0.20816)
               

               
               cli (0.152812)
               

               
               cag (0.151194)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.598229)
               

               
               cty (0.20816)
               

               
               cli (0.152812)
               

               
               cag (0.151194)

	78-345, gnl\|bosTau2\|chr23 (20551142-20551409)
	78-345, gnl\|Hg17\|chr6 (31432710-31432443)
	78-345, gnl\|Mm7\|chr17 (33358731-33358998)

	378-517, gnl\|bosTau2\|chr20 (36655627-36655762)
	378-517, gnl\|Hg17\|chr6 (31347071-31346932)
	378-517, gnl\|Mm7\|chr17 (32077846-32077709)