Non-Coding RNA Search

Ss1.1-rpigca0_003172.5

Sequence:


               
               CTGGCTCTGGCCCTCCTGGATCCTCTGGATTGAGCCGTCCCCCAAGGGCCCCTTGCCCAG
CTGGGCTCATGCTGTGCTTCACCTCTCCATCGTCTCTAAATCTTGTTTTTCCTAAAGAGG
GGTTTTGGTCTGTTCTTTCAGTCGGATCTTCTCTGGGAGGCATCAGGGCGACGAAAGCCT
GTATTCTTGGCCCTTTTCCTGCCCCCCCAGGGACTGGGCCCTGGAGGCTCCCAGCCCGTG
GCTGCCCCATTCACTCAGAGTTCTCTTTGGAGTAGAATTGGAGGGAGGGGTGGCCCTGAT
TACCACAGAGCTGTGATTTGGATGTTCTTCCAGAGAGGGCCACAAGGGGGCCACATGGTG
GCCGGGCAGTTGTCTGCAGGAATTGTGCCAAGGAGTGACAGTCATGAGGGAGCTCTCAGT
GGGGAGGAAAGAGGGTGGTGCCTTTCTTGGCTGAATGAAAGGCCAAAGCTACCTTACTGG
GGGCCTGCACCCCAGCCAGGGTGCTGGTGAGCAAGCAGTGGCAGCCTCAGCAGATCCTGC
ATTCCATGGACAGCAGGCTCTGGAGTTTTATGGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCTCTGGCCCTCCTGGATCCTCTGGATTGAGCCGTCCCCCAAGGGCCCCTTGCCCAG
CTGGGCTCATGCTGTGCTTCACCTCTCCATCGTCTCTAAATCTTGTTTTTCCTAAAGAGG
GGTTTTGGTCTGTTCTTTCAGTCGGATCTTCTCTGGGAGGCATCAGGGCGACGAAAGCCT
GTATTCTTGGCCCTTTTCCTGCCCCCCCAGGGACTGGGCCCTGGAGGCTCCCAGCCCGTG
GCTGCCCCATTCACTCAGAGTTCTCTTTGGAGTAGAATTGGAGGGAGGGGTGGCCCTGAT
TACCACAGAGCTGTGATTTGGATGTTCTTCCAGAGAGGGCCACAAGGGGGCCACATGGTG
GCCGGGCAGTTGTCTGCAGGAATTGTGCCAAGGAGTGACAGTCATGAGGGAGCTCTCAGT
GGGGAGGAAAGAGGGTGGTGCCTTTCTTGGCTGAATGAAAGGCCAAAGCTACCTTACTGG
GGGCCTGCACCCCAGCCAGGGTGCTGGTGAGCAAGCAGTGGCAGCCTCAGCAGATCCTGC
ATTCCATGGACAGCAGGCTCTGGAGTTTTATGGCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               249-426, + strand, RNAz p=0.999349

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-426, + strand, RNAz p=0.999349

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               249-412, BovGen_08634 normal cattle brain Bos taurus cDNA clone 
(gb|CO880309.1|), blast E-value=2e-32, identity=87.35% 
               

               
               249-412, 1383942 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN538252.1|), 
blast E-value=2e-32, identity=87.35% 
               

               
               249-412, 1385478 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN539673.1|), 
blast E-value=2e-32, identity=87.35% 
               

               
               249-412, 1392913 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN544021.1|), 
blast E-value=2e-32, identity=87.35% 
               

               
               249-412, 1394449 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN545399.1|), 
blast E-value=2e-32, identity=87.35% 
               

               
               249-412, LB01722.CR_P10 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV817480.1|), 
blast E-value=2e-32, identity=87.35%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               249-412, BovGen_08634 normal cattle brain Bos taurus cDNA clone 
(gb|CO880309.1|), blast E-value=2e-32, identity=87.35% 
               

               
               249-412, 1383942 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN538252.1|), 
blast E-value=2e-32, identity=87.35% 
               

               
               249-412, 1385478 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN539673.1|), 
blast E-value=2e-32, identity=87.35% 
               

               
               249-412, 1392913 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN544021.1|), 
blast E-value=2e-32, identity=87.35% 
               

               
               249-412, 1394449 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN545399.1|), 
blast E-value=2e-32, identity=87.35% 
               

               
               249-412, LB01722.CR_P10 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV817480.1|), 
blast E-value=2e-32, identity=87.35%

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_144635, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_144635, +

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-206, gnl|bosTau2|chr1 (51115773-51115567)
               

               
               1-206, gnl|canFam2|chr34 (20230495-20230781)
               

               
               1-206, gnl|echTel1|scaffold_296147 (821-571)
               

               
               1-206, gnl|hg17|chr3 (185545848-185546144)
               

               
               1-206, gnl|Hg17|chr3 (185545935-185546156)
               

               
               1-206, gnl|mm7|chr16 (20252274-20252555)
               

               
               1-206, gnl|Mm7|chr16 (20252353-20252567)
               

               
               1-206, gnl|monDom2|scaffold_180 (96350-96668)
               

               
               1-206, gnl|panTro1|chr2 (189502763-189503059)
               

               
               1-206, gnl|rheMac2|chr2 (102317818-102317522)
               

               
               1-206, gnl|rn3|chr11 (82499607-82499324)
               


               
               211-568, gnl|bosTau2|chr1 (51115522-51115162)
               

               
               211-568, gnl|Hg17|chr3 (185546200-185546574)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-206, gnl|bosTau2|chr1 (51115773-51115567)
               

               
               1-206, gnl|canFam2|chr34 (20230495-20230781)
               

               
               1-206, gnl|echTel1|scaffold_296147 (821-571)
               

               
               1-206, gnl|hg17|chr3 (185545848-185546144)
               

               
               1-206, gnl|Hg17|chr3 (185545935-185546156)
               

               
               1-206, gnl|mm7|chr16 (20252274-20252555)
               

               
               1-206, gnl|Mm7|chr16 (20252353-20252567)
               

               
               1-206, gnl|monDom2|scaffold_180 (96350-96668)
               

               
               1-206, gnl|panTro1|chr2 (189502763-189503059)
               

               
               1-206, gnl|rheMac2|chr2 (102317818-102317522)
               

               
               1-206, gnl|rn3|chr11 (82499607-82499324)
               


               
               211-568, gnl|bosTau2|chr1 (51115522-51115162)
               

               
               211-568, gnl|Hg17|chr3 (185546200-185546574)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               fcc (0.197785)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               clu (0.119646)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               clu (0.119646)

	249-412, BovGen_08634 normal cattle brain Bos taurus cDNA clone (gb\|CO880309.1\|), blast E-value=2e-32, identity=87.35%
	249-412, 1383942 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN538252.1\|), blast E-value=2e-32, identity=87.35%
	249-412, 1385478 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN539673.1\|), blast E-value=2e-32, identity=87.35%
	249-412, 1392913 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN544021.1\|), blast E-value=2e-32, identity=87.35%
	249-412, 1394449 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN545399.1\|), blast E-value=2e-32, identity=87.35%
	249-412, LB01722.CR_P10 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb\|DV817480.1\|), blast E-value=2e-32, identity=87.35%

	1-206, gnl\|bosTau2\|chr1 (51115773-51115567)
	1-206, gnl\|canFam2\|chr34 (20230495-20230781)
	1-206, gnl\|echTel1\|scaffold_296147 (821-571)
	1-206, gnl\|hg17\|chr3 (185545848-185546144)
	1-206, gnl\|Hg17\|chr3 (185545935-185546156)
	1-206, gnl\|mm7\|chr16 (20252274-20252555)
	1-206, gnl\|Mm7\|chr16 (20252353-20252567)
	1-206, gnl\|monDom2\|scaffold_180 (96350-96668)
	1-206, gnl\|panTro1\|chr2 (189502763-189503059)
	1-206, gnl\|rheMac2\|chr2 (102317818-102317522)
	1-206, gnl\|rn3\|chr11 (82499607-82499324)

	211-568, gnl\|bosTau2\|chr1 (51115522-51115162)
	211-568, gnl\|Hg17\|chr3 (185546200-185546574)