Non-Coding RNA Search

Ss1.1-rpigca0_003577.5

Sequence:


               
               TATGATTCCACATGAAAATCCACATTTCTGCTTTCCCTGGAGAAATGGAAAGATCTAGCA
ACATTCCCCTAGGGCAGCATTTGCCTGGGCTGAGCTGCCTTGTCCAGGATGGGGTGCTTG
CTTTCTGGCTTGCCACAGGCCCCACCACTCCCTTTTATCCCTGCCCTCTTTCACTCATTT
GGGTCTCCCATCTGGTCCTTTAGGCACTTGGGTTTGCCCCAGACTAGAAACTGGGCAAAC
TTTTTCTGTAAAGGGCCTCATGGTCTGTCACACTACTCTAACCTGCAGTTGTAGGGCAAA
AGCAGCCAACACATGAATGAATGGGCGTGGCTGTGTTTCAATAAAACTTTTATTTACAAA
AATAGGTGGCCAGATTTGGCCCACAGTTGTTTGTGGACCTCTGTCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGATTCCACATGAAAATCCACATTTCTGCTTTCCCTGGAGAAATGGAAAGATCTAGCA
ACATTCCCCTAGGGCAGCATTTGCCTGGGCTGAGCTGCCTTGTCCAGGATGGGGTGCTTG
CTTTCTGGCTTGCCACAGGCCCCACCACTCCCTTTTATCCCTGCCCTCTTTCACTCATTT
GGGTCTCCCATCTGGTCCTTTAGGCACTTGGGTTTGCCCCAGACTAGAAACTGGGCAAAC
TTTTTCTGTAAAGGGCCTCATGGTCTGTCACACTACTCTAACCTGCAGTTGTAGGGCAAA
AGCAGCCAACACATGAATGAATGGGCGTGGCTGTGTTTCAATAAAACTTTTATTTACAAA
AATAGGTGGCCAGATTTGGCCCACAGTTGTTTGTGGACCTCTGTCCTA

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               1-263, gnl|bosTau2|chr17 (28329840-28329586)
               

               
               1-263, gnl|canFam2|chr26 (10506513-10506163)
               

               
               1-263, gnl|dasNov1|scaffold_187055 (799-1180)
               

               
               1-263, gnl|hg17|chr12 (120678042-120678389)
               

               
               1-263, gnl|loxAfr1|scaffold_81529 (454-832)
               

               
               1-263, gnl|mm7|chr5 (122348392-122348721)
               

               
               1-263, gnl|panTro1|chrUn_random (16929306-16929653)
               

               
               1-263, gnl|rheMac2|chr11 (122862930-122863282)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-263, gnl|bosTau2|chr17 (28329840-28329586)
               

               
               1-263, gnl|canFam2|chr26 (10506513-10506163)
               

               
               1-263, gnl|dasNov1|scaffold_187055 (799-1180)
               

               
               1-263, gnl|hg17|chr12 (120678042-120678389)
               

               
               1-263, gnl|loxAfr1|scaffold_81529 (454-832)
               

               
               1-263, gnl|mm7|chr5 (122348392-122348721)
               

               
               1-263, gnl|panTro1|chrUn_random (16929306-16929653)
               

               
               1-263, gnl|rheMac2|chr11 (122862930-122863282)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cga (0.279096)
               

               
               fli (0.202881)
               

               
               csp (0.161186)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               clu (0.119646)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               fli (0.202881)
               

               
               csp (0.161186)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               clu (0.119646)

	1-263, gnl\|bosTau2\|chr17 (28329840-28329586)
	1-263, gnl\|canFam2\|chr26 (10506513-10506163)
	1-263, gnl\|dasNov1\|scaffold_187055 (799-1180)
	1-263, gnl\|hg17\|chr12 (120678042-120678389)
	1-263, gnl\|loxAfr1\|scaffold_81529 (454-832)
	1-263, gnl\|mm7\|chr5 (122348392-122348721)
	1-263, gnl\|panTro1\|chrUn_random (16929306-16929653)
	1-263, gnl\|rheMac2\|chr11 (122862930-122863282)

	cga (0.279096)
	fli (0.202881)
	csp (0.161186)
	ute (0.132784)
	eru (0.120048)
	clu (0.119646)