Ss1.1-rpigca0_003710.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACTCTGAAACACCTAAGAATGACTGGAAACAAGATCAAAAATAAAGGTGGAATGTTTTT TGCTACAATGCTACAAATTAATTCATCCTTAGAGAAATTAGATCTGGGTGACTGTGATCT GGGGATGCAAAGTGTGATAGCATTTGCTACAGTCCTAACTCAAAACCAAACAATTAAGGG ATTAAACATAAACCGACCTATACTGTATGGTGAACAGGAAGAGTCCACAGTTCATCTAGC CCACATGTTGAAAGAAAATCAGTGCCTTGTTGAACTACACCTGTCTAAGCATGATATAAA AAATTCTGGTATGAAACACTTATGTGATGCACTGTATCTGAACAGATGCCTACGCTACCT TGATATAAGCTGCAATAAAATAACTCAGGATGGAATGGCGTGTTTGGCCGATATACTGAA AAGCAATACTACGAAAAGAAACCCCACATTCTCTAATTAACAGAATAGGGGAAACAAATT TGATGAAGCTACATGTGTGGCATACTCAGACTTAATTCACATGGGCCATCTAAAACCTGA CAATACAGATGTGGAGCCATTTGTGACTTGTTGCACTTTCACAGTCAGTGAAAAGAAACC CCACATTCTCTAATATCTACATTTGGGGAAACAAATTTGATGAAGCTACATGTGTGGCAT ACTCAGACTTAATTCACATGGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACTCTGAAACACCTAAGAATGACTGGAAACAAGATCAAAAATAAAGGTGGAATGTTTTT TGCTACAATGCTACAAATTAATTCATCCTTAGAGAAATTAGATCTGGGTGACTGTGATCT GGGGATGCAAAGTGTGATAGCATTTGCTACAGTCCTAACTCAAAACCAAACAATTAAGGG ATTAAACATAAACCGACCTATACTGTATGGTGAACAGGAAGAGTCCACAGTTCATCTAGC CCACATGTTGAAAGAAAATCAGTGCCTTGTTGAACTACACCTGTCTAAGCATGATATAAA AAATTCTGGTATGAAACACTTATGTGATGCACTGTATCTGAACAGATGCCTACGCTACCT TGATATAAGCTGCAATAAAATAACTCAGGATGGAATGGCGTGTTTGGCCGATATACTGAA AAGCAATACTACGAAAAGAAACCCCACATTCTCTAATTAACAGAATAGGGGAAACAAATT TGATGAAGCTACATGTGTGGCATACTCAGACTTAATTCACATGGGCCATCTAAAACCTGA CAATACAGATGTGGAGCCATTTGTGACTTGTTGCACTTTCACAGTCAGTGAAAAGAAACC CCACATTCTCTAATATCTACATTTGGGGAAACAAATTTGATGAAGCTACATGTGTGGCAT ACTCAGACTTAATTCACATGGGCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-134, gnl|bosTau2|chr1 (63220079-63220212) | |
| 1-134, gnl|canFam2|chr34 (37420979-37421137) | |
| 1-134, gnl|canFam2|chr34 (37421130-37421004) | |
| 1-134, gnl|danRer3|chr24 (25341870-25341709) | |
| 1-134, gnl|danRer3|chr24 (25341716-25341842) | |
| 1-134, gnl|dasNov1|scaffold_24516 (3872-3998) | |
| 1-134, gnl|dasNov1|scaffold_49552 (7399-7555) | |
| 1-134, gnl|echTel1|scaffold_276243 (40090-40248) | |
| 1-134, gnl|echTel1|scaffold_276243 (40241-40115) | |
| 1-134, gnl|galGal2|chr9 (19418868-19418716) | |
| 1-134, gnl|hg17|chr12 (22618673-22618799) | |
| 1-134, gnl|hg17|chr3 (171004520-171004678) | |
| 1-134, gnl|Hg17|chr3 (171004663-171004531) | |
| 1-134, gnl|loxAfr1|scaffold_13340 (22869-23027) | |
| 1-134, gnl|loxAfr1|scaffold_13340 (23020-22894) | |
| 1-134, gnl|mm7|chr3 (30448185-30448343) | |
| 1-134, gnl|mm7|chr3 (30448336-30448210) | |
| 1-134, gnl|Mm7|chr3 (30448328-30448196) | |
| 1-134, gnl|monDom2|scaffold_52 (2211069-2210915) | |
| 1-134, gnl|oryCun1|scaffold_210783 (56533-56689) | |
| 1-134, gnl|oryCun1|scaffold_210783 (56683-56557) | |
| 1-134, gnl|panTro1|chr2 (174492887-174493045) | |
| 1-134, gnl|panTro1|chrUn_random (48997093-48997219) | |
| 1-134, gnl|rheMac2|chr11 (22882401-22882527) | |
| 1-134, gnl|rheMac2|chr2 (117214718-117214560) | |
| 1-134, gnl|rn3|chr2 (117130512-117130354) | |
| 1-134, gnl|rn3|chr2 (117130361-117130487) | |
| 1-134, gnl|xenTro1|scaffold_3 (2730371-2730219) | |
| 216-391, gnl|bosTau2|chr1 (63223450-63223624) | |
| 216-391, gnl|canFam2|chr34 (37416486-37416331) | |
| 216-391, gnl|danRer3|chr24 (25342094-25342249) | |
| 216-391, gnl|dasNov1|scaffold_24516 (4094-4248) | |
| 216-391, gnl|echTel1|scaffold_285402 (10125-9970) | |
| 216-391, gnl|hg17|chr12 (22618895-22619052) | |
| 216-391, gnl|Hg17|chr3 (170997391-170997187) | |
| 216-391, gnl|loxAfr1|scaffold_13340 (15905-15750) | |
| 216-391, gnl|mm7|chr3 (30443914-30443761) | |
| 216-391, gnl|Mm7|chr3 (30443915-30443715) | |
| 216-391, gnl|oryCun1|scaffold_210783 (48675-48522) | |
| 216-391, gnl|panTro1|chrUn_random (48997314-48997471) | |
| 216-391, gnl|rheMac2|chr11 (22882623-22882780) | |
| 216-391, gnl|rn3|chr2 (117133641-117133794) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-134, gnl|bosTau2|chr1 (63220079-63220212) | |
| 1-134, gnl|canFam2|chr34 (37420979-37421137) | |
| 1-134, gnl|canFam2|chr34 (37421130-37421004) | |
| 1-134, gnl|danRer3|chr24 (25341870-25341709) | |
| 1-134, gnl|danRer3|chr24 (25341716-25341842) | |
| 1-134, gnl|dasNov1|scaffold_24516 (3872-3998) | |
| 1-134, gnl|dasNov1|scaffold_49552 (7399-7555) | |
| 1-134, gnl|echTel1|scaffold_276243 (40090-40248) | |
| 1-134, gnl|echTel1|scaffold_276243 (40241-40115) | |
| 1-134, gnl|galGal2|chr9 (19418868-19418716) | |
| 1-134, gnl|hg17|chr12 (22618673-22618799) | |
| 1-134, gnl|hg17|chr3 (171004520-171004678) | |
| 1-134, gnl|Hg17|chr3 (171004663-171004531) | |
| 1-134, gnl|loxAfr1|scaffold_13340 (22869-23027) | |
| 1-134, gnl|loxAfr1|scaffold_13340 (23020-22894) | |
| 1-134, gnl|mm7|chr3 (30448185-30448343) | |
| 1-134, gnl|mm7|chr3 (30448336-30448210) | |
| 1-134, gnl|Mm7|chr3 (30448328-30448196) | |
| 1-134, gnl|monDom2|scaffold_52 (2211069-2210915) | |
| 1-134, gnl|oryCun1|scaffold_210783 (56533-56689) | |
| 1-134, gnl|oryCun1|scaffold_210783 (56683-56557) | |
| 1-134, gnl|panTro1|chr2 (174492887-174493045) | |
| 1-134, gnl|panTro1|chrUn_random (48997093-48997219) | |
| 1-134, gnl|rheMac2|chr11 (22882401-22882527) | |
| 1-134, gnl|rheMac2|chr2 (117214718-117214560) | |
| 1-134, gnl|rn3|chr2 (117130512-117130354) | |
| 1-134, gnl|rn3|chr2 (117130361-117130487) | |
| 1-134, gnl|xenTro1|scaffold_3 (2730371-2730219) | |
| 216-391, gnl|bosTau2|chr1 (63223450-63223624) | |
| 216-391, gnl|canFam2|chr34 (37416486-37416331) | |
| 216-391, gnl|danRer3|chr24 (25342094-25342249) | |
| 216-391, gnl|dasNov1|scaffold_24516 (4094-4248) | |
| 216-391, gnl|echTel1|scaffold_285402 (10125-9970) | |
| 216-391, gnl|hg17|chr12 (22618895-22619052) | |
| 216-391, gnl|Hg17|chr3 (170997391-170997187) | |
| 216-391, gnl|loxAfr1|scaffold_13340 (15905-15750) | |
| 216-391, gnl|mm7|chr3 (30443914-30443761) | |
| 216-391, gnl|Mm7|chr3 (30443915-30443715) | |
| 216-391, gnl|oryCun1|scaffold_210783 (48675-48522) | |
| 216-391, gnl|panTro1|chrUn_random (48997314-48997471) | |
| 216-391, gnl|rheMac2|chr11 (22882623-22882780) | |
| 216-391, gnl|rn3|chr2 (117133641-117133794) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| tra (0.369276) | |
| clu (0.239292) | |
| tes (0.207814) | |
| liv (0.146284) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.369276) | |
| clu (0.239292) | |
| tes (0.207814) | |
| liv (0.146284) |