Non-Coding RNA Search

Ss1.1-rpigca0_004589.5

Sequence:


               
               AGCAGGAGTGGTGTGGGATGTGTGAGACCCTTCTGAGGTCAAGGACAGCACAATGGCTCA
GCAGTATTCCCTGCGATGCCCAGGGGTTTTGTGTGTCATTTCTGGCAGGAGCGAGCAAGC
CGGCAGTAGTTCTTTTACCTACGGGGTGTTTTGAAATAAGTTACAGTGATTTACAGGTTA
CAAAGAGAAAGAAGGAATATCTACTTTATTTGGTTACTTCCTTGTCGGACGTCGAGATGA
GGGTCCGTTGGCTACAACGTCATTTGTCTCAATGTTGGTAGAATGCTGGTCTCCAGTCCT
GTTCTTCTGATGCATTTTTTTTCATTCCGGGGCAACGTGAAGGGGGCTGGTTTGAAGAAC
GCCAAGGAATCACACAAGAGGGTGGTGCTTTGACTAGGAAACCAGTCATATTGGTTTTAT
AGCCTGGTATATTTTGGATTTCAGATGAAATGGGGGGCGGGGAGTGACAGAAATGGTCCC
TATGCATTTATTTTCATGGATACCCTTAAATTTTCATGGGCATGCCTAACAATGAACTAT
GGTCTAACTGGAGCTTAGGGCTTATTTTAGATATTGGAGTGTAGCTTTATTACAGATGGA
TTTTATCTTTAAACATTGCATTTTGATCAACTTTGTATATTCATGTGTATTAAAATATTG
TGCACTAAATGTTTTGCCCTCGTTTGCTATTATATGGTCAAGGCATTTATCAGCACTCGT
GTGATTAACTCATGTAAGTGGCATGGGTCAGGGAAAACGATTTCCTACATTTCTGCCTAA
TTAAATTTCTGTTTTCCAGTATTACATTAATTTATTTTTGGCTTCCATTTCTGTGTAACC
AAAATAGTTACTGTATTTGTGTGGCATTCCTTTATTTGACTTTGTTGCTAAGAAAAAAAG
AAAAAAAGTTAGTTTTTATTTAAAATAATCTGTACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGGAGTGGTGTGGGATGTGTGAGACCCTTCTGAGGTCAAGGACAGCACAATGGCTCA
GCAGTATTCCCTGCGATGCCCAGGGGTTTTGTGTGTCATTTCTGGCAGGAGCGAGCAAGC
CGGCAGTAGTTCTTTTACCTACGGGGTGTTTTGAAATAAGTTACAGTGATTTACAGGTTA
CAAAGAGAAAGAAGGAATATCTACTTTATTTGGTTACTTCCTTGTCGGACGTCGAGATGA
GGGTCCGTTGGCTACAACGTCATTTGTCTCAATGTTGGTAGAATGCTGGTCTCCAGTCCT
GTTCTTCTGATGCATTTTTTTTCATTCCGGGGCAACGTGAAGGGGGCTGGTTTGAAGAAC
GCCAAGGAATCACACAAGAGGGTGGTGCTTTGACTAGGAAACCAGTCATATTGGTTTTAT
AGCCTGGTATATTTTGGATTTCAGATGAAATGGGGGGCGGGGAGTGACAGAAATGGTCCC
TATGCATTTATTTTCATGGATACCCTTAAATTTTCATGGGCATGCCTAACAATGAACTAT
GGTCTAACTGGAGCTTAGGGCTTATTTTAGATATTGGAGTGTAGCTTTATTACAGATGGA
TTTTATCTTTAAACATTGCATTTTGATCAACTTTGTATATTCATGTGTATTAAAATATTG
TGCACTAAATGTTTTGCCCTCGTTTGCTATTATATGGTCAAGGCATTTATCAGCACTCGT
GTGATTAACTCATGTAAGTGGCATGGGTCAGGGAAAACGATTTCCTACATTTCTGCCTAA
TTAAATTTCTGTTTTCCAGTATTACATTAATTTATTTTTGGCTTCCATTTCTGTGTAACC
AAAATAGTTACTGTATTTGTGTGGCATTCCTTTATTTGACTTTGTTGCTAAGAAAAAAAG
AAAAAAAGTTAGTTTTTATTTAAAATAATCTGTACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               698-857, - strand, RNAz p=0.921188

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               698-857, - strand, RNAz p=0.921188

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-936, gnl|bosTau2|chr8 (37914625-37913700)
               

               
               1-936, gnl|Hg17|chr4 (53302314-53301396)
               

               
               1-936, gnl|Mm7|chr5 (73417793-73416798)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-936, gnl|bosTau2|chr8 (37914625-37913700)
               

               
               1-936, gnl|Hg17|chr4 (53302314-53301396)
               

               
               1-936, gnl|Mm7|chr5 (73417793-73416798)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               clu (0.957167)
               

               
               nep (0.183925)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.957167)
               

               
               nep (0.183925)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               jej (0.0989218)

	1-936, gnl\|bosTau2\|chr8 (37914625-37913700)
	1-936, gnl\|Hg17\|chr4 (53302314-53301396)
	1-936, gnl\|Mm7\|chr5 (73417793-73416798)

	clu (0.957167)
	nep (0.183925)
	ret (0.128733)
	cbr (0.127975)
	jej (0.0989218)