Non-Coding RNA Search

Ss1.1-rpigca0_005304.5

Sequence:


               
               GGATAGAGGGACACATCCTCAGACCATTTTCTCTGCAAGTCTGGGCAATAAGATCCTTTT
ATTTGTAAAACCGAGTCATTACTCATACTATAAGGGCTTTCTACTTTCTATATTTAACTG
CTGCTTTCCATTTTTATAAAAACCAAAGTTGAAAAAAAATTCTGAATCATAGGATATGTA
CAGCCATGCATGCGTGACTTCAGGCAAGTTGAGCATCTCCTTTTTAAGTACTGCAGCCAC
TCACATGCCCTCTGGCAGCCTACCAGTCCTCCATTCCGCACTTCTGTCTGAGGTGGCCCT
GCTCCTTTCCTAAGCAGCCCCTCCTACTGAGCACCTGCCAGTTTAGCCTGTTAAAACCAC
TGGTGGTGAAGGTTCTGCCCCTTATTAGCTTCATAAAAGTCCTTCTCTGCAAGCAAGGAT
CCCAGACAAACATTATGATGTCTGGGATTTGGCATTATGTTGTGTTTAAAATTCTCATTG
CACAGTTTTTCATTGAAGCCGCCCTTAAGTGTATGCCTTGTCTCCTCCATGATTTCTGCC
TTGAGCAATGGATCCCACAGTGCTGAAAGGCATTTTTTTATTATGATCCACAACTATAAC
TCCCTTCTTGCTTTTAAAAAACCAAAGGCTGCCTTCATCGCATCATTTTAGGGGGTGGCT
GAGATGGTAAGTTTTTCCAGCCCTTCACATTAAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATAGAGGGACACATCCTCAGACCATTTTCTCTGCAAGTCTGGGCAATAAGATCCTTTT
ATTTGTAAAACCGAGTCATTACTCATACTATAAGGGCTTTCTACTTTCTATATTTAACTG
CTGCTTTCCATTTTTATAAAAACCAAAGTTGAAAAAAAATTCTGAATCATAGGATATGTA
CAGCCATGCATGCGTGACTTCAGGCAAGTTGAGCATCTCCTTTTTAAGTACTGCAGCCAC
TCACATGCCCTCTGGCAGCCTACCAGTCCTCCATTCCGCACTTCTGTCTGAGGTGGCCCT
GCTCCTTTCCTAAGCAGCCCCTCCTACTGAGCACCTGCCAGTTTAGCCTGTTAAAACCAC
TGGTGGTGAAGGTTCTGCCCCTTATTAGCTTCATAAAAGTCCTTCTCTGCAAGCAAGGAT
CCCAGACAAACATTATGATGTCTGGGATTTGGCATTATGTTGTGTTTAAAATTCTCATTG
CACAGTTTTTCATTGAAGCCGCCCTTAAGTGTATGCCTTGTCTCCTCCATGATTTCTGCC
TTGAGCAATGGATCCCACAGTGCTGAAAGGCATTTTTTTATTATGATCCACAACTATAAC
TCCCTTCTTGCTTTTAAAAAACCAAAGGCTGCCTTCATCGCATCATTTTAGGGGGTGGCT
GAGATGGTAAGTTTTTCCAGCCCTTCACATTAAGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               239-358, - strand, RNAz p=0.925129

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-358, - strand, RNAz p=0.925129

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               28-696, gnl|bosTau2|chr26 (11603984-11604658)
               

               
               28-696, gnl|Hg17|chr10 (101459628-101460283)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-696, gnl|bosTau2|chr26 (11603984-11604658)
               

               
               28-696, gnl|Hg17|chr10 (101459628-101460283)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               clu (1.07681)
               

               
               ill (0.175593)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (1.07681)
               

               
               ill (0.175593)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               jej (0.0989218)

	28-696, gnl\|bosTau2\|chr26 (11603984-11604658)
	28-696, gnl\|Hg17\|chr10 (101459628-101460283)

	clu (1.07681)
	ill (0.175593)
	tbr (0.154178)
	spl (0.143184)
	jej (0.0989218)