Ss1.1-rpigca0_005326.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTACTGCGTGAGGCCCAACAGTGGGATCATTGACGCGGGGGCCTCCATCAATGTATCTGT GATGTTACAGCCTTTCGATTATGATCCCAATGAGAAGAGTAAACACAAGTTTATGGTTCA GTCTATGTTTGCTCCAGCTGACACTTCTGATATGGAGGCAGCTTGGAAGGAGGCAAAACC GGAAGACCTTATGGATTCAAAACTTAGATGTGTGTTTGAATTGCCAGCAGAAAATGATAA ACCACATGATGTAGAAATAAATAAAATTATATCCACAACTGCATCAAAGACAGAAACGCC AGTGGTGTCTAAAGCCCTGAGTTCCGCTCTGGACGACACCGAAGTGAAGAAGGTGATGGA AGAGTGTAAGCGGCTGCAGAGCGAGGTCCAGAGGCTGCGGGAGGAGAACAAGCAGTTGAA GGAGGAAGACGGCCTTCGGATGAGGAAGCCCGTGCCGAGCAACAGCCCTGCGCCCGCGCC CGCCACGCCTGGGAAGGAGGAGGGCCTCAGCACGAGGCTGCTGGCGCTGGTGGTTTTGTT CTTCATCGTGGGCGTGATCATAGGGAAGATCGCCTTGTAGGCTGCGTGCAGAGGACGGGA AACCGGGCTGACGGATCCGCCGCTTCGTGGGATTGAAATTGGTCCTAACCACGTGTAAAA AGAAATTAACGTATGATGACATCTCACAGGTCTTGCCTTTAAATTACCCCTCCCTGTGCC GTGCGCACGCGCGCACATGCACACGCACACACGCACACACACACACAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTACTGCGTGAGGCCCAACAGTGGGATCATTGACGCGGGGGCCTCCATCAATGTATCTGT GATGTTACAGCCTTTCGATTATGATCCCAATGAGAAGAGTAAACACAAGTTTATGGTTCA GTCTATGTTTGCTCCAGCTGACACTTCTGATATGGAGGCAGCTTGGAAGGAGGCAAAACC GGAAGACCTTATGGATTCAAAACTTAGATGTGTGTTTGAATTGCCAGCAGAAAATGATAA ACCACATGATGTAGAAATAAATAAAATTATATCCACAACTGCATCAAAGACAGAAACGCC AGTGGTGTCTAAAGCCCTGAGTTCCGCTCTGGACGACACCGAAGTGAAGAAGGTGATGGA AGAGTGTAAGCGGCTGCAGAGCGAGGTCCAGAGGCTGCGGGAGGAGAACAAGCAGTTGAA GGAGGAAGACGGCCTTCGGATGAGGAAGCCCGTGCCGAGCAACAGCCCTGCGCCCGCGCC CGCCACGCCTGGGAAGGAGGAGGGCCTCAGCACGAGGCTGCTGGCGCTGGTGGTTTTGTT CTTCATCGTGGGCGTGATCATAGGGAAGATCGCCTTGTAGGCTGCGTGCAGAGGACGGGA AACCGGGCTGACGGATCCGCCGCTTCGTGGGATTGAAATTGGTCCTAACCACGTGTAAAA AGAAATTAACGTATGATGACATCTCACAGGTCTTGCCTTTAAATTACCCCTCCCTGTGCC GTGCGCACGCGCGCACATGCACACGCACACACGCACACACACACACAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 642-761, - strand, RNAz p=0.660673 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 642-761, - strand, RNAz p=0.660673 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-761, gnl|bosTau2|chr23 (25856415-25855658) | |
| 1-761, gnl|Hg17|chr20 (56443060-56452863) | |
| 1-761, gnl|Mm7|chr2 (173515911-173522774) | |
| 56-161, gnl|bosTau2|chr13 (39250270-39250165) | |
| 56-161, gnl|canFam2|chr24 (46203041-46203168) | |
| 56-161, gnl|danRer3|chr6 (31560416-31560291) | |
| 56-161, gnl|dasNov1|scaffold_86155 (39575-39702) | |
| 56-161, gnl|echTel1|scaffold_280455 (42439-42312) | |
| 56-161, gnl|fr1|chrUn (115274759-115274638) | |
| 56-161, gnl|galGal2|chr20 (10704217-10704083) | |
| 56-161, gnl|hg17|chr20 (56443050-56443177) | |
| 56-161, gnl|Hg17|chr20 (56443060-56443165) | |
| 56-161, gnl|loxAfr1|scaffold_58199 (8805-8678) | |
| 56-161, gnl|mm7|chr2 (173515901-173516027) | |
| 56-161, gnl|Mm7|chr2 (173515911-173516016) | |
| 56-161, gnl|monDom2|scaffold_1 (172819653-172819780) | |
| 56-161, gnl|oryCun1|scaffold_33900 (1241-1130) | |
| 56-161, gnl|panTro1|chr21 (59430497-59430624) | |
| 56-161, gnl|rheMac2|chr10 (6086029-6085902) | |
| 56-161, gnl|rn3|chr3 (164568453-164568579) | |
| 56-161, gnl|tetNig1|chr11 (7386839-7386960) | |
| 56-161, gnl|xenTro1|scaffold_333 (879821-879691) | |
| 420-752, gnl|bosTau2|chr13 (39241969-39241635) | |
| 420-752, gnl|Hg17|chr20 (56452537-56452863) | |
| 420-752, gnl|Mm7|chr2 (173522455-173522773) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-761, gnl|bosTau2|chr23 (25856415-25855658) | |
| 1-761, gnl|Hg17|chr20 (56443060-56452863) | |
| 1-761, gnl|Mm7|chr2 (173515911-173522774) | |
| 56-161, gnl|bosTau2|chr13 (39250270-39250165) | |
| 56-161, gnl|canFam2|chr24 (46203041-46203168) | |
| 56-161, gnl|danRer3|chr6 (31560416-31560291) | |
| 56-161, gnl|dasNov1|scaffold_86155 (39575-39702) | |
| 56-161, gnl|echTel1|scaffold_280455 (42439-42312) | |
| 56-161, gnl|fr1|chrUn (115274759-115274638) | |
| 56-161, gnl|galGal2|chr20 (10704217-10704083) | |
| 56-161, gnl|hg17|chr20 (56443050-56443177) | |
| 56-161, gnl|Hg17|chr20 (56443060-56443165) | |
| 56-161, gnl|loxAfr1|scaffold_58199 (8805-8678) | |
| 56-161, gnl|mm7|chr2 (173515901-173516027) | |
| 56-161, gnl|Mm7|chr2 (173515911-173516016) | |
| 56-161, gnl|monDom2|scaffold_1 (172819653-172819780) | |
| 56-161, gnl|oryCun1|scaffold_33900 (1241-1130) | |
| 56-161, gnl|panTro1|chr21 (59430497-59430624) | |
| 56-161, gnl|rheMac2|chr10 (6086029-6085902) | |
| 56-161, gnl|rn3|chr3 (164568453-164568579) | |
| 56-161, gnl|tetNig1|chr11 (7386839-7386960) | |
| 56-161, gnl|xenTro1|scaffold_333 (879821-879691) | |
| 420-752, gnl|bosTau2|chr13 (39241969-39241635) | |
| 420-752, gnl|Hg17|chr20 (56452537-56452863) | |
| 420-752, gnl|Mm7|chr2 (173522455-173522773) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.598229) | |
| mas (0.210305) | |
| nlu (0.191681) |