Non-Coding RNA Search

Ss1.1-rpigca0_005385.5

Sequence:


               
               GCCCAAGTTCATATCCATCTTCTATGCATGCACCAGGTGAAGCACAAGAGCCAGAACCCA
AAGGCACACCTTCAGAGTCCCCAAGCTGTGCACATAAACACAAGGGACCTTGTCCAGGGT
CACCAAGCTTCCCTGCTTCTGGGCACGGTCTCCATTATCTCTCGGCTGTCCCCATGCAGG
ATCACTGCCCTCCTGGTGCTTGGCCTCCTGGCTCAAACTTGTGGGCCAGGGTCTTGACGA
GTATGGATTCAGGGAAGGTCCATAGCCTCCCTTGATTCAGGGGTGACTTTTCAGACATGG
CTGGGGTTGTTTGAGTCATCGATATTAGTCGGCCCTCTACAAAGCACATTTCCCTGGTGA
CCTGAACAACTCCCTTGGCTGAGGCACCTTCTGCTACTCAGATGGAGTTCTAACTGTTGG
CCAGACCTGGGTCTCTAGGCTAGGAAGGTTCATGTAGTGGCAACAGCAGTGCCTCCAGAT
CTAACTCCCAGGAGCTGGAAAATTTGAATTCTGTGACATCCAGACAAGGTGTCCGCATAC
TGCTGGAGAATCTTGAGTGGGCAACACAGTAGAAGGTCCAAGGGCAAAAGGTGTCCAGTG
AGGCCTGTGACATCTGACAGGGGCCACTTGTGGTCTCATCATTACTTGTATGTGTGGACT
CCATGTCCCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCAAGTTCATATCCATCTTCTATGCATGCACCAGGTGAAGCACAAGAGCCAGAACCCA
AAGGCACACCTTCAGAGTCCCCAAGCTGTGCACATAAACACAAGGGACCTTGTCCAGGGT
CACCAAGCTTCCCTGCTTCTGGGCACGGTCTCCATTATCTCTCGGCTGTCCCCATGCAGG
ATCACTGCCCTCCTGGTGCTTGGCCTCCTGGCTCAAACTTGTGGGCCAGGGTCTTGACGA
GTATGGATTCAGGGAAGGTCCATAGCCTCCCTTGATTCAGGGGTGACTTTTCAGACATGG
CTGGGGTTGTTTGAGTCATCGATATTAGTCGGCCCTCTACAAAGCACATTTCCCTGGTGA
CCTGAACAACTCCCTTGGCTGAGGCACCTTCTGCTACTCAGATGGAGTTCTAACTGTTGG
CCAGACCTGGGTCTCTAGGCTAGGAAGGTTCATGTAGTGGCAACAGCAGTGCCTCCAGAT
CTAACTCCCAGGAGCTGGAAAATTTGAATTCTGTGACATCCAGACAAGGTGTCCGCATAC
TGCTGGAGAATCTTGAGTGGGCAACACAGTAGAAGGTCCAAGGGCAAAAGGTGTCCAGTG
AGGCCTGTGACATCTGACAGGGGCCACTTGTGGTCTCATCATTACTTGTATGTGTGGACT
CCATGTCCCATC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-670, gnl|bosTau2|chr1 (79742391-79741698)
               

               
               1-670, gnl|Hg17|chr3 (142577808-142578492)
               

               
               1-670, gnl|Mm7|chr9 (96386427-96385424)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-670, gnl|bosTau2|chr1 (79742391-79741698)
               

               
               1-670, gnl|Hg17|chr3 (142577808-142578492)
               

               
               1-670, gnl|Mm7|chr9 (96386427-96385424)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.358938)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.358938)

	1-670, gnl\|bosTau2\|chr1 (79742391-79741698)
	1-670, gnl\|Hg17\|chr3 (142577808-142578492)
	1-670, gnl\|Mm7\|chr9 (96386427-96385424)