Non-Coding RNA Search

Ss1.1-rpigca0_005580.5

Sequence:


               
               AGTAGCTCCCTGAGGTAAGTAAATGAGTATTATTTTCATGTTACATGTTAATACACTAAG
GCAACAAAATATTTAAAGTGCCTTGGATTATATTACAGAGCAAATCGGAAGAATTCACTT
TGAAGACTGACCATATTCTTTTATGTGCTGTTCATTGGCTAATAATTCATGTGTGACCTC
TTATTTCGCAAACAATAATAACAGAAGTTGCCATTCATAATTTGAAGAAAAGACTGTGAA
GCCAGTACTTTACCCTCCTAGTCATGTACATTCTTCGGTTCTCACACACAGAGGAGGAGT
TACTTAGAAGAAGAAGATCAGTAGCCTCTCTGCCACAGCCAACCCTCCCTTCTGAGTGTC
ATCCACTCGGTTCCACTTAAGGTGCTGTCTTTGCTTATCTTAGCTTTCCAGGAATCACAG
TCAAACTGGGAGCAAAGCTGGTCAGTCACACATCTCACCTCCTTTCTTTATAAGATAGCA
GAATCTTTGGCTTGTAGGTTTTACTCAGCACTGTCAGTCCTCTATCTTTTTTGGCCTTTC
ATTAGATTTGCAAAACATAAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAGCTCCCTGAGGTAAGTAAATGAGTATTATTTTCATGTTACATGTTAATACACTAAG
GCAACAAAATATTTAAAGTGCCTTGGATTATATTACAGAGCAAATCGGAAGAATTCACTT
TGAAGACTGACCATATTCTTTTATGTGCTGTTCATTGGCTAATAATTCATGTGTGACCTC
TTATTTCGCAAACAATAATAACAGAAGTTGCCATTCATAATTTGAAGAAAAGACTGTGAA
GCCAGTACTTTACCCTCCTAGTCATGTACATTCTTCGGTTCTCACACACAGAGGAGGAGT
TACTTAGAAGAAGAAGATCAGTAGCCTCTCTGCCACAGCCAACCCTCCCTTCTGAGTGTC
ATCCACTCGGTTCCACTTAAGGTGCTGTCTTTGCTTATCTTAGCTTTCCAGGAATCACAG
TCAAACTGGGAGCAAAGCTGGTCAGTCACACATCTCACCTCCTTTCTTTATAAGATAGCA
GAATCTTTGGCTTGTAGGTTTTACTCAGCACTGTCAGTCCTCTATCTTTTTTGGCCTTTC
ATTAGATTTGCAAAACATAAAACA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-508, gnl|bosTau2|chr10 (46096754-46097254)
               

               
               1-508, gnl|Hg17|chr14 (52582113-52581278)
               

               
               1-508, gnl|Mm7|chr14 (40912829-40912322)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-508, gnl|bosTau2|chr10 (46096754-46097254)
               

               
               1-508, gnl|Hg17|chr14 (52582113-52581278)
               

               
               1-508, gnl|Mm7|chr14 (40912829-40912322)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.478583)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.478583)

	1-508, gnl\|bosTau2\|chr10 (46096754-46097254)
	1-508, gnl\|Hg17\|chr14 (52582113-52581278)
	1-508, gnl\|Mm7\|chr14 (40912829-40912322)