Non-Coding RNA Search

Ss1.1-rpigca0_005845.5

Sequence:


               
               GGAACCACGAGGCTTTCCAGCATCTGATTACACTTCACACAGAATGACTTAAACCTGCAG
ATATTTGAATTAGTGTAAGCGCACAAATGTTTGTGTGTCTGTGTCTGTGTCTGAATTGTG
TGAACTTATTAGGGACGTCTTCTCACTTGCTCTCTACTCTTCCATCCCTGGTTTTGCCTA
TTCATCATTAAGCTGCCTGGATCCTTCTCTGAGCCGGCCCTTCCCCAACCTGTAAGTTTC
TCACATTCCTCCAGACTGGCCTTGGCTCCTTTGGCACCCTCCTCTCTCACTGAGGAGCAA
TCCTCGTTAGGTAGTGAGTGAGTCTGGGGCATACTGACTGGAACACTGCAGACAGTTAGC
AGATTGTGTTATTTGTTGAAAGTGACAGTTTCTGGCAGCTGGTTCCTGCTTCAATAGGAT
GGCATATGAAATTCTCAGCATATCTATTGTCTTGGCTTGAGTTTGATGCATTTGTTACAT
GTTGTTCATGACTCAGACAACTCAAGACAATTGAGCCATGCCAACTTGGGGTGTGAACAG
AATCCTTCCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACCACGAGGCTTTCCAGCATCTGATTACACTTCACACAGAATGACTTAAACCTGCAG
ATATTTGAATTAGTGTAAGCGCACAAATGTTTGTGTGTCTGTGTCTGTGTCTGAATTGTG
TGAACTTATTAGGGACGTCTTCTCACTTGCTCTCTACTCTTCCATCCCTGGTTTTGCCTA
TTCATCATTAAGCTGCCTGGATCCTTCTCTGAGCCGGCCCTTCCCCAACCTGTAAGTTTC
TCACATTCCTCCAGACTGGCCTTGGCTCCTTTGGCACCCTCCTCTCTCACTGAGGAGCAA
TCCTCGTTAGGTAGTGAGTGAGTCTGGGGCATACTGACTGGAACACTGCAGACAGTTAGC
AGATTGTGTTATTTGTTGAAAGTGACAGTTTCTGGCAGCTGGTTCCTGCTTCAATAGGAT
GGCATATGAAATTCTCAGCATATCTATTGTCTTGGCTTGAGTTTGATGCATTTGTTACAT
GTTGTTCATGACTCAGACAACTCAAGACAATTGAGCCATGCCAACTTGGGGTGTGAACAG
AATCCTTCCCAC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-552, gnl|bosTau2|chr15 (40412905-40412382)
               

               
               9-552, gnl|Hg17|chr11 (34639272-34639817)
               

               
               9-552, gnl|Mm7|chr2 (103116212-103115769)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-552, gnl|bosTau2|chr15 (40412905-40412382)
               

               
               9-552, gnl|Hg17|chr11 (34639272-34639817)
               

               
               9-552, gnl|Mm7|chr2 (103116212-103115769)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.341297)
               

               
               clu (0.239292)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.341297)
               

               
               clu (0.239292)

	9-552, gnl\|bosTau2\|chr15 (40412905-40412382)
	9-552, gnl\|Hg17\|chr11 (34639272-34639817)
	9-552, gnl\|Mm7\|chr2 (103116212-103115769)