Non-Coding RNA Search

Ss1.1-rpigca0_007150.5

Sequence:


               
               CCCGGGCAGAAGGCCCGACAGCTGGGATGTACATCAGGATTCGAACTGTAATGGCATTTG
GGGTGTCGATCCAAAAGATGGAATTCCATATGAGAAGAAATTTTGTGAAGGTTCACAGCC
CAGGGGAATCATTTTGCTGGGAGACTCGGCTGGGGCTCATTTTCATATCCCTCCAGAATG
GATCACAGCTTCGCAGATGTCTTTGAAATCCTTCTTCAATTTACCAGCAGCTCTTACTGA
TGAGCTCAACTGGCCCCAACTCTCTGGTGCTACTGGATTTCTGAACTCTACTAGCGGACT
TAAAGAAAACTCTATCTACCTTCGTTTACGGAAAAGGAACCGCTGCAATCACAGGGACTA
CCAGAACATTTCAAGAAACGGTGCATCTTCCCAAAACCTGGAGAGCTTTATAGAAAGTTT
GTCTAGGAACCAGCTGCTGGACCATCCAGCCATCGTCATATATGCCATGATTGGAAATGA
TGTTTGCAACGGGAAAACTAACCCAGTCCCAGCAATGACCACTCCTGAGAAACTCTTCTC
CAAGGTCATGCAGACTCTGCAGTATCTAGATTCCCACCTACCAAATGGCAGCCATGTTAT
CTTATTCGGCTTACCAGATGGAACCTTTCTCTGGGATAATTTGCACAACAGATATCATCC
TCTCGGCCAGCTAAACAAGGACGTGACCTACGAGCATTTCTACTCCTTCCTGAACTGTCT
CCAGGTCAGCCCCTGCCATGGATGGATGTCCTCCAACCGGACGCTGAGGACTCTCACTTC
AGAGAGAGCAGAACAACTCTCCAGTACGCTGAAAAGAATTGCAACCAGCCAGAAATTTGC
AAACTTCAATCTTTTCTACATGGATTTTGACTTCCGAGAAATCATGGAGGAGTGGCGAAA
GAGAGGCGGGCAGCCCTGGCAGCTCATCGAACCTGTCGATGGATTCCACCCCAATGAGGT
GGCTTTACAGCTGTTGGCAGATGGCTTCTGGAAGAAGGCGCAGCTCCAGTGGCCCCAGGT
CCTGGGAAAGGAGAATCCATTCAACCACCAGATCGAGCAGGTGTTTGGAGACCAAGGGGG
GCACTGAGTCCCCAAGGACACATGTTCCTGGGTAACTCAGGGGGACAGAAATATGGGTCA
GCTCATTTAAAAGACTGTTATGGGGCTGTCGTGTCACAAACTCACAGGGCCCTCCTCTTA
GTAGCATCTTTGCAAAGTGCGTTTCTCTCATTTAAGAGCTTATCTAAATGACAGTGTGAT
TCTGCGTGATTCTGGGGTCAGTGACCCTCTAACCCTCAAATAACCTTTAATAAAGTACTT
TGAGTGCCATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGGCAGAAGGCCCGACAGCTGGGATGTACATCAGGATTCGAACTGTAATGGCATTTG
GGGTGTCGATCCAAAAGATGGAATTCCATATGAGAAGAAATTTTGTGAAGGTTCACAGCC
CAGGGGAATCATTTTGCTGGGAGACTCGGCTGGGGCTCATTTTCATATCCCTCCAGAATG
GATCACAGCTTCGCAGATGTCTTTGAAATCCTTCTTCAATTTACCAGCAGCTCTTACTGA
TGAGCTCAACTGGCCCCAACTCTCTGGTGCTACTGGATTTCTGAACTCTACTAGCGGACT
TAAAGAAAACTCTATCTACCTTCGTTTACGGAAAAGGAACCGCTGCAATCACAGGGACTA
CCAGAACATTTCAAGAAACGGTGCATCTTCCCAAAACCTGGAGAGCTTTATAGAAAGTTT
GTCTAGGAACCAGCTGCTGGACCATCCAGCCATCGTCATATATGCCATGATTGGAAATGA
TGTTTGCAACGGGAAAACTAACCCAGTCCCAGCAATGACCACTCCTGAGAAACTCTTCTC
CAAGGTCATGCAGACTCTGCAGTATCTAGATTCCCACCTACCAAATGGCAGCCATGTTAT
CTTATTCGGCTTACCAGATGGAACCTTTCTCTGGGATAATTTGCACAACAGATATCATCC
TCTCGGCCAGCTAAACAAGGACGTGACCTACGAGCATTTCTACTCCTTCCTGAACTGTCT
CCAGGTCAGCCCCTGCCATGGATGGATGTCCTCCAACCGGACGCTGAGGACTCTCACTTC
AGAGAGAGCAGAACAACTCTCCAGTACGCTGAAAAGAATTGCAACCAGCCAGAAATTTGC
AAACTTCAATCTTTTCTACATGGATTTTGACTTCCGAGAAATCATGGAGGAGTGGCGAAA
GAGAGGCGGGCAGCCCTGGCAGCTCATCGAACCTGTCGATGGATTCCACCCCAATGAGGT
GGCTTTACAGCTGTTGGCAGATGGCTTCTGGAAGAAGGCGCAGCTCCAGTGGCCCCAGGT
CCTGGGAAAGGAGAATCCATTCAACCACCAGATCGAGCAGGTGTTTGGAGACCAAGGGGG
GCACTGAGTCCCCAAGGACACATGTTCCTGGGTAACTCAGGGGGACAGAAATATGGGTCA
GCTCATTTAAAAGACTGTTATGGGGCTGTCGTGTCACAAACTCACAGGGCCCTCCTCTTA
GTAGCATCTTTGCAAAGTGCGTTTCTCTCATTTAAGAGCTTATCTAAATGACAGTGTGAT
TCTGCGTGATTCTGGGGTCAGTGACCCTCTAACCCTCAAATAACCTTTAATAAAGTACTT
TGAGTGCCATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61825601|ref|XP_589606.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61825601|ref|XP_589606.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               483-640, - strand, RNAz p=0.703001
               

               
               546-658, + strand, RNAz p=0.843086
               

               
               1077-1194, + strand, RNAz p=0.628439

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               483-640, - strand, RNAz p=0.703001
               

               
               546-658, + strand, RNAz p=0.843086
               

               
               1077-1194, + strand, RNAz p=0.628439

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001637, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001637, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               483-666, gnl|bosTau2|chr4 (29175119-29174935)
               

               
               483-666, gnl|canFam2|chr14 (50879703-50880105)
               

               
               483-666, gnl|dasNov1|scaffold_21146 (16655-16218)
               

               
               483-666, gnl|echTel1|scaffold_286932 (71975-72482)
               

               
               483-666, gnl|hg17|chr7 (36353098-36353562)
               

               
               483-666, gnl|Hg17|chr7 (36353348-36353164)
               

               
               483-666, gnl|loxAfr1|scaffold_7966 (85088-85603)
               

               
               483-666, gnl|mm7|chr13 (20366129-20365708)
               

               
               483-666, gnl|Mm7|chr13 (20365876-20366060)
               

               
               483-666, gnl|panTro1|chr6 (37523777-37524239)
               

               
               483-666, gnl|rheMac2|chr3 (89691120-89690616)
               

               
               483-666, gnl|rn3|chr17 (51502301-51502712)
               


               
               957-1332, gnl|bosTau2|chr4 (29146551-29146197)
               

               
               957-1332, gnl|Hg17|chr7 (36326228-36325851)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               483-666, gnl|bosTau2|chr4 (29175119-29174935)
               

               
               483-666, gnl|canFam2|chr14 (50879703-50880105)
               

               
               483-666, gnl|dasNov1|scaffold_21146 (16655-16218)
               

               
               483-666, gnl|echTel1|scaffold_286932 (71975-72482)
               

               
               483-666, gnl|hg17|chr7 (36353098-36353562)
               

               
               483-666, gnl|Hg17|chr7 (36353348-36353164)
               

               
               483-666, gnl|loxAfr1|scaffold_7966 (85088-85603)
               

               
               483-666, gnl|mm7|chr13 (20366129-20365708)
               

               
               483-666, gnl|Mm7|chr13 (20365876-20366060)
               

               
               483-666, gnl|panTro1|chr6 (37523777-37524239)
               

               
               483-666, gnl|rheMac2|chr3 (89691120-89690616)
               

               
               483-666, gnl|rn3|chr17 (51502301-51502712)
               


               
               957-1332, gnl|bosTau2|chr4 (29146551-29146197)
               

               
               957-1332, gnl|Hg17|chr7 (36326228-36325851)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               clu (23.8095)
               

               
               fty (0.351679)
               

               
               ute (0.265569)
               

               
               cbl (0.229595)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               med (0.116252)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (23.8095)
               

               
               fty (0.351679)
               

               
               ute (0.265569)
               

               
               cbl (0.229595)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               med (0.116252)

	483-640, - strand, RNAz p=0.703001
	546-658, + strand, RNAz p=0.843086
	1077-1194, + strand, RNAz p=0.628439

	483-666, gnl\|bosTau2\|chr4 (29175119-29174935)
	483-666, gnl\|canFam2\|chr14 (50879703-50880105)
	483-666, gnl\|dasNov1\|scaffold_21146 (16655-16218)
	483-666, gnl\|echTel1\|scaffold_286932 (71975-72482)
	483-666, gnl\|hg17\|chr7 (36353098-36353562)
	483-666, gnl\|Hg17\|chr7 (36353348-36353164)
	483-666, gnl\|loxAfr1\|scaffold_7966 (85088-85603)
	483-666, gnl\|mm7\|chr13 (20366129-20365708)
	483-666, gnl\|Mm7\|chr13 (20365876-20366060)
	483-666, gnl\|panTro1\|chr6 (37523777-37524239)
	483-666, gnl\|rheMac2\|chr3 (89691120-89690616)
	483-666, gnl\|rn3\|chr17 (51502301-51502712)

	957-1332, gnl\|bosTau2\|chr4 (29146551-29146197)
	957-1332, gnl\|Hg17\|chr7 (36326228-36325851)

	clu (23.8095)
	fty (0.351679)
	ute (0.265569)
	cbl (0.229595)
	mcp (0.170648)
	eye (0.170503)
	med (0.116252)